Rorug03G0011600

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001045
Physical Location & Seq
Forward (+)
896877 .. 898324
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0011600.1

Sequence Viewer

Length: 723 bp
ATGCATTGCCAATGTGATCTCATTGCCAGTCCTCCAGATGCGTGCAGGCTATCGGTGCTTTCTAGGGTTATCAGATTGGCAGCAGAATCCGACGCCGTTTGGGACAAGTTCCTGCCCCCTGAGACCCATGAGATCCTATCCCACTCTGCCACTGCCTCTGCTGCCAAATCCAAGAAAGAGCTCTACATGTCTCTCAGCCACAGCCCCGTCCTCATCGACGATGGCACTATGAGCTTTTCTTTGGAAAAATGGACTGGAAAGAAATGTTACATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCCTCGATATTGGCAATGGATTACTCTGCCTAGCACCAGGTTCGAGGAAGTAGCTGAGCTTCAGTGGGTTGAGCATGGGGCCGGATTTGACAACTATCCTGTGGTGGTGGCGGTTTCTGCAAGGGATTATGGCTTTGATTATGAAAGCCCTAGTTTGAGAGAAATTGTTGATGGAGGAGACCTTAAGCACACTGCCTTTCTGGTGCATCCCGAGAGAGGAATCAGTAATGATCAGCATTTTCCAAAGGAAACAGCAGATGGCTGGTTGGAGATGAAGCTAGGTGAATTTTTCTGTGGTGGAGGAGAAGATGGAGAGTTGGAGATGATTTGTTGTGAGATTGATATTAGCAGCAAGAGTGGCATCATTGTGCAAGGGATTGAGATCAGACCGTGTGATAGGAACGTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

240

Amino Acids

26.88

Weight (kDa)

5.03

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 87 - 234 8.5e-29 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 422
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 717
AfiI CCNNNNNNNGG 1 cut(s) 527
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 186
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 6 cut(s) 181, 234, 278, 365, 370, 589
AluI AGCT 6 cut(s) 181, 234, 278, 365, 370, 589
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 116, 195, 483
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 4 cut(s) 80, 161, 278, 660
ApoI RAATTY 1 cut(s) 596
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 317, 605
AvaI CYCGRG 1 cut(s) 521
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 92, 148, 265, 672
BccI CCATC 4 cut(s) 215, 476, 563, 614
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 349
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 116, 195, 483
BfaI CTAG 4 cut(s) 63, 342, 462, 590
BfoI RGCGCY 1 cut(s) 289
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 4 cut(s) 81, 162, 279, 661
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 4 cut(s) 82, 163, 280, 662
Bme1390I CCNGG 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 3 cut(s) 28, 526, 681
BpmI CTGGAG 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 116, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 2 cut(s) 27, 259
Bse3DI GCAATG 3 cut(s) 4, 21, 332
Bse8I GATNNNNATC 1 cut(s) 692
BseBI CCWGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 3 cut(s) 4, 21, 332
BseMII CTCAG 3 cut(s) 111, 208, 357
BseNI ACTGG 2 cut(s) 27, 259
BseRI GAGGAG 3 cut(s) 303, 501, 627
BseXI GCAGC 4 cut(s) 92, 148, 265, 672
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 3 cut(s) 116, 195, 483
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 392
Bso31I GGTCTC 2 cut(s) 116, 483
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 4 cut(s) 16, 132, 541, 693
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 3 cut(s) 112, 207, 358
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 116, 483
BsrDI GCAATG 3 cut(s) 4, 21, 332
BsrI ACTGG 2 cut(s) 27, 259
BssMI GATC 4 cut(s) 16, 132, 541, 693
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 702
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 43, 47
BstDEI CTNAG 3 cut(s) 120, 194, 366
BstF5I GGATG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 4 cut(s) 19, 135, 544, 696
BstMAI GTCTC 3 cut(s) 116, 195, 483
BstMBI GATC 4 cut(s) 16, 132, 541, 693
BstMWI GCNNNNNNNGC 5 cut(s) 55, 161, 231, 428, 669
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 92, 148, 265, 672
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 392
BtsCI GGATG 1 cut(s) 517
BtsI GCAGTG 2 cut(s) 150, 501
BtsIMutI CAGTG 3 cut(s) 150, 380, 501
Cac8I GCNNGC 2 cut(s) 43, 47
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 390
CseI GACGC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 347
Csp6I GTAC 1 cut(s) 716
CviAII CATG 4 cut(s) 128, 187, 271, 386
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 3 cut(s) 120, 194, 366
DpnI GATC 4 cut(s) 18, 134, 543, 695
DpnII GATC 4 cut(s) 16, 132, 541, 693
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 2 cut(s) 116, 483
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 347
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 4 cut(s) 131, 190, 274, 389
FaiI YATR 8 cut(s) 129, 188, 230, 272, 387, 441, 453, 721
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 127, 186, 270, 385
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 81, 162, 279, 661
FokI GGATG 1 cut(s) 504
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 81, 162, 279, 661
FspBI CTAG 4 cut(s) 63, 342, 462, 590
GlaI GCGC 1 cut(s) 287
GluI GCNGC 4 cut(s) 81, 162, 279, 661
GsuI CTGGAG 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 393
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 4 cut(s) 131, 190, 274, 389
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 2 cut(s) 86, 531
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 317, 605
Hpy188I TCNGA 4 cut(s) 74, 91, 294, 698
Hpy188III TCNNGA 2 cut(s) 35, 521
Hpy99I CGWCG 2 cut(s) 95, 221
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 4, 45, 281, 431, 517, 682
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 161, 231, 428, 669
HpyF3I CTNAG 3 cut(s) 120, 194, 366
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 4 cut(s) 131, 190, 274, 389
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 4 cut(s) 16, 132, 541, 693
Lsp1109I GCAGC 4 cut(s) 92, 148, 265, 672
LweI GCATC 3 cut(s) 28, 526, 681
MabI ACCWGGT 1 cut(s) 347
MaeI CTAG 4 cut(s) 63, 342, 462, 590
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 266
MalI GATC 4 cut(s) 18, 134, 543, 695
MboI GATC 4 cut(s) 16, 132, 541, 693
MboII GAAGA 1 cut(s) 629
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 474, 596
MmeI TCCRAC 3 cut(s) 114, 558, 609
MnlI CCTC 8 cut(s) 42, 166, 221, 324, 349, 479, 521, 605
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 5 cut(s) 55, 161, 231, 428, 669
NdeII GATC 4 cut(s) 16, 132, 541, 693
NlaIII CATG 4 cut(s) 131, 190, 274, 389
NlaIV GGNNCC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 2 cut(s) 86, 531
PkrI GCNGC 4 cut(s) 82, 163, 280, 662
PscI ACATGT 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 4 cut(s) 81, 162, 279, 661
Sau3AI GATC 4 cut(s) 16, 132, 541, 693
Sau96I GGNCC 1 cut(s) 390
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 1 cut(s) 183
SexAI ACCWGGT 1 cut(s) 347
SfaNI GCATC 3 cut(s) 28, 526, 681
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 2 cut(s) 474, 596
SsiI CCGC 1 cut(s) 422
SspMI CTAG 4 cut(s) 63, 342, 462, 590
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 702
TaiI ACGT 1 cut(s) 717
TaqI TCGA 3 cut(s) 216, 316, 354
TasI AATT 2 cut(s) 474, 596
TfiI GAWTC 2 cut(s) 86, 531
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 3 cut(s) 157, 380, 508
TseI GCWGC 4 cut(s) 80, 161, 278, 660
TspDTI ATGAA 2 cut(s) 468, 599
TspRI CASTG 3 cut(s) 157, 380, 508
Vha464I CTTAAG 1 cut(s) 494
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 190
XspI CTAG 4 cut(s) 63, 342, 462, 590
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.