Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265413.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

84 .. 542

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265413.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgaaggcagagacacagcctatagaacctgatcacacaactgttggtgcactaataaaagcatgcgcaaatgctggtcaggttgaaagggcacgtgaagtgtataagatgattcataaatacaagattaagggtagttctgaggtttacaccatagctgttaattgttgcagcctgactggtgattgggactttgcttgcactgtatatgatgacatgatcaggaatggtgtggtccctgatgaggtaaattttcagcaatacttgttgtcatgcaaagttatgctttgtgctcaggttttaccaacactagctggccgtgactcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

109

Amino Acids

12.08

Weight (kDa)

5.59

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	2 cut(s)	158, 314
AluI	AGCT	2 cut(s)	158, 314
Alw21I	GWGCWC	2 cut(s)	52, 295
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	2 cut(s)	52, 94
BbrPI	CACGTG	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	52, 295
BbvI	GCAGC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	303
BclI	TGATCA	2 cut(s)	31, 219
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	132, 308
BseNI	ACTGG	1 cut(s)	184
BseSI	GKGCMC	2 cut(s)	52, 94
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	52, 295
BslFI	GGGAC	2 cut(s)	203, 221
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	203, 221
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	3 cut(s)	52, 94, 295
Bsp143I	GATC	2 cut(s)	31, 219
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	133, 307
BspLI	GGNNCC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	31, 219
Bst4CI	ACNGT	2 cut(s)	43, 205
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	64, 199, 316
BstDEI	CTNAG	2 cut(s)	141, 294
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	34, 222
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	31, 219
BstNSI	RCATGY	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	2 cut(s)	52, 94
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	3 cut(s)	64, 199, 316
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	235
CviAII	CATG	3 cut(s)	63, 217, 273
CviJI	RGCY	5 cut(s)	19, 158, 174, 314, 318
CviKI_1	RGCY	5 cut(s)	19, 158, 174, 314, 318
DdeI	CTNAG	2 cut(s)	141, 294
DpnI	GATC	2 cut(s)	33, 221
DpnII	GATC	2 cut(s)	31, 219
EaeI	YGGCCR	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	235
Eco72I	CACGTG	1 cut(s)	95
FaeI	CATG	3 cut(s)	66, 220, 276
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	203, 221
FatI	CATG	3 cut(s)	62, 216, 272
FbaI	TGATCA	2 cut(s)	31, 219
Fnu4HI	GCNGC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	311
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	66, 220, 276
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	112, 323
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	50, 148
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	223, 327
Hpy8I	GTNNAC	2 cut(s)	50, 148
HpyCH4III	ACNGT	2 cut(s)	43, 205
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	50, 171, 201, 276
HpyF3I	CTNAG	2 cut(s)	141, 294
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	66, 220, 276
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	31, 219
Kzo9I	GATC	2 cut(s)	31, 219
LpnPI	CCDG	9 cut(s)	42, 60, 65, 165, 188, 208, 252, 281, 300
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	33, 221
MboI	GATC	2 cut(s)	31, 219
MhlI	GDGCHC	3 cut(s)	52, 94, 295
MluCI	AATT	2 cut(s)	163, 250
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	2 cut(s)	136, 238
MseI	TTAA	2 cut(s)	129, 162
NdeII	GATC	2 cut(s)	31, 219
NlaIII	CATG	3 cut(s)	66, 220, 276
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	320
NsbI	TGCGCA	1 cut(s)	67
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	129, 162
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	31, 219
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	3 cut(s)	52, 94, 295
SetI	ASST	8 cut(s)	31, 84, 97, 147, 160, 249, 300, 316
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	235
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	2 cut(s)	163, 250
SspMI	CTAG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	43, 205
TaiI	ACGT	1 cut(s)	97
TasI	AATT	2 cut(s)	163, 250
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	129, 162
Tru9I	TTAA	2 cut(s)	129, 162
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	17, 104
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.