Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003092.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

63358 .. 64351

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003092.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggttagtgctagagtagaaccaaatgttcacacatatggggcactgattgatgattgtggcagagctggggaagtggcaaaggcatttggtgcttatgggataatgaggtctaaggtagttccattgactgctgttgttattgttactacatctcaaaagctaccgtttattggtgtctcaaaaggagttcgcatgttttcaaagttgaaggtttctcatctaaccgttcctattgtcgttttcatctatctaggtgccatgtgttgctgtactttaaaggtcaagcagtccaacattgactttgacgcagcaattggagaacttgaagatgaagataatgccaggaaaaatcagctgcatgttgatgcagtgaagaatgttacagaggaaatagaatcaatctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

136

Amino Acids

14.73

Weight (kDa)

6.82

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	204, 211, 329
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	68, 163, 358
AluI	AGCT	3 cut(s)	68, 163, 358
Alw26I	GTCTC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	311, 358
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	323, 345
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	3 cut(s)	12, 254, 409
BisI	GCNGC	2 cut(s)	312, 359
BlsI	GCNGC	2 cut(s)	313, 360
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	323, 345
BseYI	CCCAGC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	168, 229
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	199, 365
BstSCI	CCNGG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	323, 345
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	44, 378
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	196, 262, 362
CviJI	RGCY	3 cut(s)	68, 163, 358
CviKI_1	RGCY	3 cut(s)	68, 163, 358
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	344
FaeI	CATG	3 cut(s)	199, 265, 365
FaiI	YATR	6 cut(s)	37, 39, 99, 197, 263, 363
FatI	CATG	3 cut(s)	195, 261, 361
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	312, 359
Fsp4HI	GCNGC	2 cut(s)	312, 359
FspBI	CTAG	3 cut(s)	12, 254, 409
GluI	GCNGC	2 cut(s)	312, 359
GsaI	CCCAGC	1 cut(s)	72
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	199, 265, 365
HinfI	GANTC	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	168, 229
HpyCH4V	TGCA	2 cut(s)	361, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	199, 265, 365
LpnPI	CCDG	3 cut(s)	54, 331, 358
Lsp1109I	GCAGC	2 cut(s)	323, 345
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	3 cut(s)	12, 254, 409
MaeIII	GTNAC	2 cut(s)	145, 382
MboII	GAAGA	3 cut(s)	341, 347, 388
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	2 cut(s)	102, 382
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	2 cut(s)	36, 366
MspA1I	CMGCKG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	37
NlaIII	CATG	3 cut(s)	199, 265, 365
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	199, 365
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	313, 360
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	2 cut(s)	36, 366
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	312, 359
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	70, 113, 120, 165, 216, 259, 285, 360
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	36, 366
Sse9I	AATT	1 cut(s)	315
SspMI	CTAG	3 cut(s)	12, 254, 409
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	168, 229
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	2 cut(s)	51, 378
TseI	GCWGC	2 cut(s)	311, 358
TspDTI	ATGAA	2 cut(s)	235, 348
TspRI	CASTG	2 cut(s)	51, 378
XceI	RCATGY	2 cut(s)	199, 365
XspI	CTAG	3 cut(s)	12, 254, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.