Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

52452536 .. 52453316

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGTCTCCCATTTTATTATAGCTATGTTTTCTTCCTCTCCCAGGTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGAGGCACGATTGATGGTTGTGGCGAGCTGGCATGGAGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGTTTGAGCAAAAGGCAAATGAGGTGGTGATCGAGCTTCCTTGGGTCAAGAATGTCATTGTGACTATGTCAAGCACAACCTGCACAACCCCTTTATGCCAGGCAACTTCCACAAGAGTTTACAGACAATTTCAAATATTGTGGCAGTTTCTAGTTGCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

8.64

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	43, 55
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	42, 270
AluBI	AGCT	3 cut(s)	24, 120, 208
AluI	AGCT	3 cut(s)	24, 120, 208
Alw26I	GTCTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	46
BccI	CCATC	2 cut(s)	49, 100
BciT130I	CCWGG	2 cut(s)	44, 272
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	44, 272
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	44, 272
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	42, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 55
BseBI	CCWGG	2 cut(s)	44, 272
BseDI	CCNNGG	2 cut(s)	42, 212
BseLI	CCNNNNNNNGG	2 cut(s)	43, 55
BsgI	GTGCAG	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	43, 55
BsmAI	GTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	42, 212
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	44, 272
BstAPI	GCANNNNNTGC	2 cut(s)	149, 252
BstC8I	GCNNGC	2 cut(s)	118, 122
BstDEI	CTNAG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 252
BstNI	CCWGG	2 cut(s)	44, 272
BstSCI	CCNGG	2 cut(s)	42, 270
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	118, 122
Cfr13I	GGNCC	1 cut(s)	46
CspCI	CAANNNNNGTGG	4 cut(s)	177, 212, 293, 328
CviAII	CATG	2 cut(s)	50, 125
CviJI	RGCY	3 cut(s)	24, 120, 208
CviKI_1	RGCY	3 cut(s)	24, 120, 208
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	42, 270
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	53, 128
FaiI	YATR	9 cut(s)	21, 27, 51, 91, 93, 126, 156, 239, 268
FatI	CATG	2 cut(s)	49, 124
FauNDI	CATATG	1 cut(s)	91
FspBI	CTAG	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	87
Hin1II	CATG	2 cut(s)	53, 128
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	85, 292
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	85, 292
HpyCH4V	TGCA	2 cut(s)	255, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 252
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	53, 128
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	7 cut(s)	29, 51, 56, 106, 257, 265, 284
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	47, 88, 159, 187
MslI	CAYNNNNRTG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	44, 272
MvaI	CCWGG	2 cut(s)	44, 272
MwoI	GCNNNNNNNGC	2 cut(s)	149, 252
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	53, 128
NmuCI	GTSAC	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	42, 270
PspGI	CCWGG	2 cut(s)	42, 270
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	44, 272
SetI	ASST	8 cut(s)	26, 48, 122, 170, 198, 210, 254, 335
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	299
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	42, 270
StyI	CCWWGG	1 cut(s)	212
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.