Rh6AG053500

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
7875695 .. 7888410
12716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG053500.1

Sequence Viewer

Length: 1242 bp
ATGCAGAGCATTGAGGCAATTGCAACTGATTTGGCATACTTGTATGGCCACTACCCCAAGCTCAGTGATACCAATGTCTTTCGTGTTCTAGCTACTGCTTCTTTTCTTGATCTTCAGGTTTGCAAATCCATGAAATTTCTAGTTGGTGGTGCTTCCTTGCAGTTTGAGCAAAAGGCAAATGAGGTGGTGATCGAGCTTCCTTGGGTCAAGAATGTCATTGTGACTATGTCAGCACAACCTGCACAACCCCTTTATGCCGGGCAACTTCCACAAGAGTTACAGACAATTTCAAATATTGTGGCAGTTTCTAGTTGCAAGAGACCAGCTTCTAACTACAACAGAGTGGATTATGTGCCTACAGTGTTTGACAACATCAGTGCTAATTTGGTGGCGGATGCACAGTTAACCTTGGATTGTGGGACACTGCAGAACAATGAGAAACTGACTTGCTCGAGCTGCAGGGAGCTTGCACTTCAGATTGATCAGCAGTTCCAAGCTCTTGGGCCTGGCATTGGCGCCAAGTCTATAGCGCTTGTTGGAGGAGAGTGTGAGGTGCAACAATCTCCTGTTCTTGCAAAGCGGCCGCATATTATTGTTGCAATACCTGGACGCTTCCTTCATCATCTAACCAAGACAAGAGGATTCTCTCTAGGCACAATTAAATATTTGGTTTTAGATGAGGCAGACAGGTTGCTTGGTGAGGAGTTTCAGAAAACAACAAATGAAATTCTGAAGGTCATTCCTCATGGTGGTGAACGGAGAACATATTTATTTTCCACTACTATGACCAACAAGGTCAAGAAGGTGGCAAGGGCTGGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCGAAGTATTCTACAGTTGAAACCCTACAGCAGCAAATGATGAGTACACCAGTGCAGTACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTAGTTGTTGGAAGGTTAAAGGCTCGAAACATCAACCAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGCGTAGAAGAGGAGGAACCAAAAAAGGCTGCAGTTGACAGTAGTCCTACTGACAATGATAAATCAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTAAACGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGGCCTTGAAGGCTTGA

Protein Analysis

413

Amino Acids

46.18

Weight (kDa)

8.8

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 147 - 268 4.4e-20 DEAD/DEAH box helicase
DUF1087 PF06465 359 - 410 1.1e-19 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 515
AciI CCGC 3 cut(s) 392, 580, 584
AcoI YGGCCR 2 cut(s) 46, 581
AcsI RAATTY 4 cut(s) 134, 726, 1042, 1135
AcuI CTGAAG 3 cut(s) 98, 458, 752
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 2 cut(s) 895, 908
AfeI AGCGCT 1 cut(s) 531
AfiI CCNNNNNNNGG 2 cut(s) 512, 749
AgsI TTSAA 7 cut(s) 291, 842, 869, 950, 1049, 1184, 1234
AjnI CCWGG 3 cut(s) 505, 604, 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
AluBI AGCT 7 cut(s) 61, 92, 196, 326, 456, 466, 497
AluI AGCT 7 cut(s) 61, 92, 196, 326, 456, 466, 497
Alw26I GTCTC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 451
Aor51HI AGCGCT 1 cut(s) 531
AoxI GGCC 4 cut(s) 46, 503, 581, 1227
ApeKI GCWGC 3 cut(s) 456, 880, 1097
ApoI RAATTY 4 cut(s) 134, 726, 1042, 1135
AspLEI GCGC 2 cut(s) 518, 532
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 4 cut(s) 199, 710, 764, 925
AvaI CYCGRG 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 515
BauI CACGAG 1 cut(s) 936
BbvI GCAGC 3 cut(s) 443, 892, 1084
BciT130I CCWGG 3 cut(s) 507, 606, 1034
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 4 cut(s) 89, 140, 309, 650
BfmI CTRYAG 7 cut(s) 357, 425, 457, 525, 861, 875, 1098
BfoI RGCGCY 2 cut(s) 519, 533
BfuAI ACCTGC 1 cut(s) 247
BglI GCCNNNNNGGC 1 cut(s) 1235
BisI GCNGC 5 cut(s) 457, 581, 584, 881, 1098
BlsI GCNGC 5 cut(s) 458, 582, 585, 882, 1099
Bme1390I CCNGG 4 cut(s) 259, 507, 606, 1034
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 3 cut(s) 517, 827, 1086
BmrFI CCNGG 4 cut(s) 259, 507, 606, 1034
BmsI GCATC 3 cut(s) 385, 857, 951
BoxI GACNNNNGTC 1 cut(s) 1110
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 200, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 749
Bse1I ACTGG 1 cut(s) 899
BseBI CCWGG 3 cut(s) 507, 606, 1034
BseDI CCNNGG 2 cut(s) 200, 408
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 512, 749
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 899
BseRI GAGGAG 3 cut(s) 555, 716, 1094
BseX3I CGGCCG 1 cut(s) 581
BseXI GCAGC 3 cut(s) 443, 892, 1084
BsgI GTGCAG 2 cut(s) 225, 923
Bsh1285I CGRYCG 1 cut(s) 584
BshFI GGCC 4 cut(s) 48, 505, 583, 1229
BshNI GGYRCC 1 cut(s) 515
BsiEI CGRYCG 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 512, 749
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 4 cut(s) 48, 505, 583, 1229
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 1 cut(s) 451
Bsp143I GATC 3 cut(s) 109, 189, 481
BspACI CCGC 3 cut(s) 392, 580, 584
BspANI GGCC 4 cut(s) 48, 505, 583, 1229
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 517, 827, 1086
BspMAI CTGCAG 3 cut(s) 429, 461, 1102
BspMI ACCTGC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 1 cut(s) 899
BssECI CCNNGG 2 cut(s) 200, 408
BssMI GATC 3 cut(s) 109, 189, 481
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 2 cut(s) 200, 408
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 3 cut(s) 507, 606, 1034
Bst4CI ACNGT 4 cut(s) 361, 402, 865, 1109
Bst6I CTCTTC 2 cut(s) 1071, 1205
BstACI GRCGYC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 468, 1227
BstDEI CTNAG 3 cut(s) 62, 821, 972
BstF5I GGATG 1 cut(s) 400
BstH2I RGCGCY 2 cut(s) 519, 533
BstHHI GCGC 2 cut(s) 518, 532
BstKTI GATC 3 cut(s) 112, 192, 484
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 109, 189, 481
BstMCI CGRYCG 1 cut(s) 584
BstMWI GCNNNNNNNGC 4 cut(s) 166, 239, 456, 1235
BstNI CCWGG 3 cut(s) 507, 606, 1034
BstPAI GACNNNNGTC 1 cut(s) 1110
BstSCI CCNGG 4 cut(s) 257, 505, 604, 1032
BstSFI CTRYAG 7 cut(s) 357, 425, 457, 525, 861, 875, 1098
BstV1I GCAGC 3 cut(s) 443, 892, 1084
BstXI CCANNNNNNTGG 1 cut(s) 500
BstZI CGGCCG 1 cut(s) 581
BsuRI GGCC 4 cut(s) 48, 505, 583, 1229
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 5 cut(s) 70, 366, 382, 422, 906
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 468, 1227
CciNI GCGGCCGC 1 cut(s) 581
CfoI GCGC 2 cut(s) 518, 532
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 1 cut(s) 618
CsiI ACCWGGT 1 cut(s) 1032
Csp6I GTAC 2 cut(s) 894, 907
CspCI CAANNNNNGTGG 4 cut(s) 165, 200, 279, 314
CviAII CATG 2 cut(s) 130, 746
CviQI GTAC 2 cut(s) 894, 907
DdeI CTNAG 3 cut(s) 62, 821, 972
DinI GGCGCC 1 cut(s) 517
DpnI GATC 3 cut(s) 111, 191, 483
DpnII GATC 3 cut(s) 109, 189, 481
EaeI YGGCCR 2 cut(s) 46, 581
EagI CGGCCG 1 cut(s) 581
Eam1104I CTCTTC 2 cut(s) 1071, 1205
EarI CTCTTC 2 cut(s) 1071, 1205
EciI GGCGGA 1 cut(s) 407
EclXI CGGCCG 1 cut(s) 581
Eco130I CCWWGG 2 cut(s) 200, 408
Eco147I AGGCCT 1 cut(s) 1229
Eco31I GGTCTC 1 cut(s) 313
Eco47III AGCGCT 1 cut(s) 531
Eco52I CGGCCG 1 cut(s) 581
Eco57I CTGAAG 3 cut(s) 98, 458, 752
Eco88I CYCGRG 1 cut(s) 451
EcoRII CCWGG 3 cut(s) 505, 604, 1032
EcoT14I CCWWGG 2 cut(s) 200, 408
EgeI GGCGCC 1 cut(s) 517
EheI GGCGCC 1 cut(s) 517
ErhI CCWWGG 2 cut(s) 200, 408
FaeI CATG 2 cut(s) 133, 749
FalI AAGNNNNNCTT 1 cut(s) 1214
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 129, 745
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 457, 581, 584, 881, 1098
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 5 cut(s) 457, 581, 584, 881, 1098
FspBI CTAG 4 cut(s) 89, 140, 309, 650
GlaI GCGC 2 cut(s) 517, 531
GluI GCNGC 5 cut(s) 457, 581, 584, 881, 1098
HaeII RGCGCY 2 cut(s) 519, 533
HaeIII GGCC 4 cut(s) 48, 505, 583, 1229
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 618
HhaI GCGC 2 cut(s) 518, 532
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 2 cut(s) 133, 749
Hin6I GCGC 2 cut(s) 516, 530
HinP1I GCGC 2 cut(s) 516, 530
HincII GTYRAC 2 cut(s) 405, 1105
HindII GTYRAC 2 cut(s) 405, 1105
HinfI GANTC 1 cut(s) 642
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 258
HphI GGTGA 4 cut(s) 199, 710, 764, 925
Hpy166II GTNNAC 4 cut(s) 405, 755, 896, 1105
Hpy188I TCNGA 3 cut(s) 477, 711, 732
Hpy188III TCNNGA 3 cut(s) 107, 208, 799
Hpy8I GTNNAC 4 cut(s) 405, 755, 896, 1105
HpyAV CCTTC 5 cut(s) 626, 727, 796, 1002, 1228
HpyCH4III ACNGT 4 cut(s) 361, 402, 865, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 239, 456, 1235
HpyF3I CTNAG 3 cut(s) 62, 821, 972
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 2 cut(s) 133, 749
HspAI GCGC 2 cut(s) 516, 530
KasI GGCGCC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 481
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 109, 189, 481
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 3 cut(s) 443, 892, 1084
LweI GCATC 3 cut(s) 385, 857, 951
MabI ACCWGGT 1 cut(s) 1032
MaeI CTAG 4 cut(s) 89, 140, 309, 650
MaeIII GTNAC 2 cut(s) 220, 276
MalI GATC 3 cut(s) 111, 191, 483
MboI GATC 3 cut(s) 109, 189, 481
MboII GAAGA 8 cut(s) 104, 847, 962, 988, 1088, 1157, 1196, 1222
MfeI CAATTG 2 cut(s) 18, 945
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 517, 985
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 5 cut(s) 404, 660, 1013, 1154, 1190
MslI CAYNNNNRTG 2 cut(s) 750, 782
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 4 cut(s) 259, 507, 606, 1034
MunI CAATTG 2 cut(s) 18, 945
MvaI CCWGG 3 cut(s) 507, 606, 1034
MwoI GCNNNNNNNGC 4 cut(s) 166, 239, 456, 1235
NarI GGCGCC 1 cut(s) 516
NciI CCSGG 1 cut(s) 259
NdeII GATC 3 cut(s) 109, 189, 481
NlaIII CATG 2 cut(s) 133, 749
NlaIV GGNNCC 3 cut(s) 517, 827, 1086
NmuCI GTSAC 1 cut(s) 220
NotI GCGGCCGC 1 cut(s) 581
PaeR7I CTCGAG 1 cut(s) 451
PceI AGGCCT 1 cut(s) 1229
PfeI GAWTC 1 cut(s) 642
PflFI GACNNNGTC 1 cut(s) 226
PkrI GCNGC 5 cut(s) 458, 582, 585, 882, 1099
PluTI GGCGCC 1 cut(s) 519
PshAI GACNNNNGTC 1 cut(s) 1110
Psp6I CCWGG 3 cut(s) 505, 604, 1032
PspGI CCWGG 3 cut(s) 505, 604, 1032
PspN4I GGNNCC 3 cut(s) 517, 827, 1086
PspPI GGNCC 1 cut(s) 503
PspXI VCTCGAGB 1 cut(s) 451
PstI CTGCAG 3 cut(s) 429, 461, 1102
PsyI GACNNNGTC 1 cut(s) 226
RsaI GTAC 2 cut(s) 895, 908
RsaNI GTAC 2 cut(s) 894, 907
RseI CAYNNNNRTG 2 cut(s) 750, 782
SaqAI TTAA 5 cut(s) 404, 660, 1013, 1154, 1190
SatI GCNGC 5 cut(s) 457, 581, 584, 881, 1098
Sau3AI GATC 3 cut(s) 109, 189, 481
Sau96I GGNCC 1 cut(s) 503
ScrFI CCNGG 4 cut(s) 259, 507, 606, 1034
SexAI ACCWGGT 1 cut(s) 1032
SfaNI GCATC 3 cut(s) 385, 857, 951
SfcI CTRYAG 7 cut(s) 357, 425, 457, 525, 861, 875, 1098
SfoI GGCGCC 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 750, 782
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SseBI AGGCCT 1 cut(s) 1229
SsiI CCGC 3 cut(s) 392, 580, 584
SspDI GGCGCC 1 cut(s) 515
SspI AATATT 2 cut(s) 295, 665
SspMI CTAG 4 cut(s) 89, 140, 309, 650
StuI AGGCCT 1 cut(s) 1229
StyD4I CCNGG 4 cut(s) 257, 505, 604, 1032
StyI CCWWGG 2 cut(s) 200, 408
TaaI ACNGT 4 cut(s) 361, 402, 865, 1109
TaqI TCGA 4 cut(s) 192, 452, 851, 1021
TatI WGTACW 2 cut(s) 893, 906
TauI GCSGC 2 cut(s) 583, 586
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 5 cut(s) 404, 660, 1013, 1154, 1190
Tru9I TTAA 5 cut(s) 404, 660, 1013, 1154, 1190
TscAI CASTG 5 cut(s) 70, 366, 382, 429, 906
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 456, 880, 1097
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 146, 608, 738, 1182
TspGWI ACGGA 1 cut(s) 772
TspRI CASTG 5 cut(s) 70, 366, 382, 429, 906
Tth111I GACNNNGTC 1 cut(s) 226
XapI RAATTY 4 cut(s) 134, 726, 1042, 1135
XhoI CTCGAG 1 cut(s) 451
XspI CTAG 4 cut(s) 89, 140, 309, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.