Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

49246278 .. 49247664

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTCATTATGCAGAGTGCAACTTCGTTGCAACCTATATATTCAATGGGAGGAGACTTGAAGACTGCTTCCCTTCTTCCCATTACTTTGAGGTCGTTGGCAAATTGCAATGCTGCTAGTATGCCAAGGTTCCTTAGTGGGCTTGTGTCCTCTGGATTTGCCTTCTTGAATCAGGCTAAGCATTTGGGTCTCTACAGGCCAAATCATGGCATACCTGTCCAAATCCAGAGGGGCGGCCATATCCAGCCGTTCGGGTGCATGATTGCGGTGGAAGAGTCCACCTTCGGGGTCATTGCCTACAGCGAGAATGCCCGGGACATGCTCGATCTGATGCCCCAGTCAGTTTCCGTGCTCGAGAGGGGGAGACCCTCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

126

Amino Acids

13.56

Weight (kDa)

8.77

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_2	PF08446	74 - 115	7.5e-15	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	2 cut(s)	234, 266
AcoI	YGGCCR	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	206, 285
AgsI	TTSAA	3 cut(s)	45, 61, 169
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	48, 194, 358
Ama87I	CYCGRG	2 cut(s)	312, 353
AoxI	GGCC	2 cut(s)	197, 235
ApeKI	GCWGC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	313, 314
AvaI	CYCGRG	2 cut(s)	312, 353
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	313, 314
BcoDI	GTCTC	3 cut(s)	48, 194, 358
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	193, 298
BisI	GCNGC	2 cut(s)	114, 235
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	115, 236
Bme1390I	CCNGG	2 cut(s)	313, 314
BmeT110I	CYCGRG	2 cut(s)	312, 353
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	313, 314
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	313, 314
BsaI	GGTCTC	2 cut(s)	194, 358
BsaJI	CCNNGG	2 cut(s)	125, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 285
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	2 cut(s)	115, 291
BseDI	CCNNGG	2 cut(s)	125, 312
BseLI	CCNNNNNNNGG	2 cut(s)	206, 285
BseMI	GCAATG	2 cut(s)	115, 291
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	199, 237
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	312, 353
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	206, 285
BsmAI	GTCTC	3 cut(s)	48, 194, 358
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	199, 237
Bso31I	GGTCTC	2 cut(s)	194, 358
BsoBI	CYCGRG	2 cut(s)	312, 353
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	325
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	234, 266
BspANI	GGCC	2 cut(s)	199, 237
BspLI	GGNNCC	1 cut(s)	131
BspTNI	GGTCTC	2 cut(s)	194, 358
BsrDI	GCAATG	2 cut(s)	115, 291
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	125, 312
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	134, 177
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	3 cut(s)	48, 194, 358
BstMBI	GATC	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	311, 312
BstSFI	CTRYAG	2 cut(s)	193, 298
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	199, 237
Cfr9I	CCCGGG	1 cut(s)	312
CviAII	CATG	3 cut(s)	206, 259, 319
CviJI	RGCY	5 cut(s)	142, 176, 199, 237, 247
CviKI_1	RGCY	5 cut(s)	142, 176, 199, 237, 247
DdeI	CTNAG	2 cut(s)	134, 177
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	2 cut(s)	194, 358
Eco88I	CYCGRG	2 cut(s)	312, 353
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	209, 262, 322
FaiI	YATR	9 cut(s)	11, 38, 40, 122, 207, 212, 240, 260, 320
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	205, 258, 318
Fnu4HI	GCNGC	2 cut(s)	114, 235
Fsp4HI	GCNGC	2 cut(s)	114, 235
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	114, 235
HaeIII	GGCC	2 cut(s)	199, 237
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	3 cut(s)	209, 262, 322
HinfI	GANTC	2 cut(s)	169, 275
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	153, 166, 226, 355
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	3 cut(s)	83, 172, 292
HpyCH4V	TGCA	5 cut(s)	13, 20, 31, 108, 258
HpyF3I	CTNAG	2 cut(s)	134, 177
Hsp92II	CATG	3 cut(s)	209, 262, 322
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	138, 158, 181, 228, 239, 257, 326, 350
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	68, 73, 284
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	44, 84, 160, 222, 351
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	313, 314
Mva1269I	GAATGC	1 cut(s)	313
NciI	CCSGG	2 cut(s)	313, 314
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	209, 262, 322
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	353
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	115, 236
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	114, 235
Sau3AI	GATC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	313, 314
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	5 cut(s)	37, 95, 131, 217, 284
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	2 cut(s)	193, 298
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	234, 266
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	311, 312
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	2 cut(s)	324, 354
TasI	AATT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	337
TspMI	CCCGGG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	206
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	353
XmaI	CCCGGG	1 cut(s)	312
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.