Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004991.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

14751 .. 16426

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004991.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggttagtgctggagtagaaccaaatgttcactcatatggggcactgattgatggttgtggcagagctggggaagtggcaaaggcatttggtgcttatgggacaatgaggtctaagatggtactttcagtcagagctggggaagtggcaaaggcatttggtgcttatgggacaatgaggtctaaggtcaagcagtccaacattgactttgaagcagcaattggagaacttgaagatgaagataatgctgggaagaatcagcttgcaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

90

Amino Acids

9.36

Weight (kDa)

5.75

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	109, 178
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	212, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	68, 137, 262
AluI	AGCT	3 cut(s)	68, 137, 262
ApeKI	GCWGC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	47, 112
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	3 cut(s)	68, 137, 248
BslFI	GGGAC	2 cut(s)	115, 184
BsmFI	GGGAC	2 cut(s)	115, 184
Bsp1286I	GDGCHC	1 cut(s)	46
BstAPI	GCANNNNNTGC	2 cut(s)	92, 161
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	114, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 161
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	122
CviJI	RGCY	3 cut(s)	68, 137, 262
CviKI_1	RGCY	3 cut(s)	68, 137, 262
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	114, 183
DrdI	GACNNNNNNGTC	2 cut(s)	109, 178
DseDI	GACNNNNNNGTC	2 cut(s)	109, 178
FaiI	YATR	4 cut(s)	37, 39, 99, 168
FaqI	GGGAC	2 cut(s)	115, 184
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	3 cut(s)	72, 141, 252
GsuI	CTGGAG	1 cut(s)	33
HinfI	GANTC	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 161
HpyF3I	CTNAG	2 cut(s)	114, 183
LpnPI	CCDG	3 cut(s)	54, 123, 234
Lsp1109I	GCAGC	1 cut(s)	227
MboII	GAAGA	3 cut(s)	245, 251, 265
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	102, 171
MslI	CAYNNNNRTG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	92, 161
NdeI	CATATG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	217
PspFI	CCCAGC	3 cut(s)	68, 137, 248
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	70, 113, 139, 182, 189, 264
SgeI	CNNG	6 cut(s)	24, 81, 150, 202, 242, 261
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	219
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.