Rh4AG386800

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001045
Physical Location & Seq
Forward (+)
69325776 .. 69361606
35831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG386800.1

Sequence Viewer

Length: 264 bp
ATGGCGACGAATATCGGCATGATGGACGGTGCTTACTTCGTCAGTAGATCTGAGATCTTGGCTTGGATCAACTCCACTCGATCTCCAACTCCATCTAAACAAAGTCAAAGAGAGAACAATGTTCGTCGTCGTCGGAAGAACCGATTGGTTTGGGTCTTTTCTGGGACCAATGATTGTATATATGTGTATCCATTATTCTACGGGATAACGGGAAGCATATATGTTTCTAGGTTAAAATGTGACGTGGTATGGTTTAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

87

Amino Acids

10.16

Weight (kDa)

10.02

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AjiI CACGTC 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AlwI GGATC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 165
AvaII GGWCC 1 cut(s) 165
BccI CCATC 2 cut(s) 16, 100
BciVI GTATCC 1 cut(s) 198
BfaI CTAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 198
BglII AGATCT 2 cut(s) 47, 54
Bme18I GGWCC 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
BseMII CTCAG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 47, 54, 66, 80
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 74
BssMI GATC 4 cut(s) 47, 54, 66, 80
Bst4CI ACNGT 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 4 cut(s) 50, 57, 69, 83
BstMBI GATC 4 cut(s) 47, 54, 66, 80
BstX2I RGATCY 2 cut(s) 47, 54
BstYI RGATCY 2 cut(s) 47, 54
BsuI GTATCC 1 cut(s) 198
BtrI CACGTC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 165
CviAII CATG 1 cut(s) 19
CviJI RGCY 1 cut(s) 62
CviKI_1 RGCY 1 cut(s) 62
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 49, 56, 68, 82
DpnII GATC 4 cut(s) 47, 54, 66, 80
Eco47I GGWCC 1 cut(s) 165
FaeI CATG 1 cut(s) 22
FaiI YATR 8 cut(s) 20, 179, 181, 183, 218, 220, 222, 250
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 18
FspBI CTAG 1 cut(s) 228
Hin1II CATG 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 52, 135
Hpy99I CGWCG 4 cut(s) 10, 129, 132, 135
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 4 cut(s) 47, 54, 66, 80
LpnPI CCDG 1 cut(s) 147
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 49, 56, 68, 82
MboI GATC 4 cut(s) 47, 54, 66, 80
MboII GAAGA 1 cut(s) 148
MflI RGATCY 2 cut(s) 47, 54
MmeI TCCRAC 2 cut(s) 110, 113
MseI TTAA 2 cut(s) 233, 255
NdeII GATC 4 cut(s) 47, 54, 66, 80
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 165
PsuI RGATCY 2 cut(s) 47, 54
SaqAI TTAA 2 cut(s) 233, 255
Sau3AI GATC 4 cut(s) 47, 54, 66, 80
Sau96I GGNCC 1 cut(s) 165
SetI ASST 2 cut(s) 233, 246
SgeI CNNG 9 cut(s) 31, 70, 75, 90, 174, 214, 222, 240, 256
SinI GGWCC 1 cut(s) 165
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 79
Tru1I TTAA 2 cut(s) 233, 255
Tru9I TTAA 2 cut(s) 233, 255
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 165
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.