Rh5AG380700

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001045
Physical Location & Seq
Reverse (-)
65062327 .. 65068779
6453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG380700.1

Sequence Viewer

Length: 450 bp
ATGGCGACGAATATCGGCATCATGGACGGGGCTTATTTCGTCGGTAGATCTGAGATCTTGGCTTGGATCAACTCCACTCGATCTCCAACTCCATCTAAACAAAGTCAAAGAAGCGTGTTCCGGTGCGGTTCACTGCACTCTCTCCCACTTTCACAATGGCAGATTTTACCAAAGAACTCGAACCCCTTTTCGATTACAGTCACGTACAAGGACGAGGCGTCTGCTTCTCCTCTGACCAAGAAGAGGAAGAAGGCTTCGAATTCAGTAGTTGAAAAGGTTGATGACAGTGTGAAGATTGGTTCTTGCTTAATCAGCCAAGAATCTGGTGCTTCACCTTGCTGGATACGACAGTGTCAAGGTTGGTTCTTGCTTAATCCGATTTCTTTATGGGTTGTTAATCATGTGATTGTTGGTTTAATAATTTGCATGTTCTTCTCTAGCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

9.4

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 272
AhdI GACNNNNNGTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 324
AsuII TTCGAA 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BccI CCATC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciVI GTATCC 1 cut(s) 336
BfaI CTAG 1 cut(s) 438
BfuI GTATCC 1 cut(s) 336
BglII AGATCT 2 cut(s) 47, 54
BmeRI GACNNNNNGTC 1 cut(s) 217
BmsI GCATC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 47, 54, 66, 80
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 257
BssMI GATC 4 cut(s) 47, 54, 66, 80
BssNI GRCGYC 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 199, 287, 351
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 4 cut(s) 50, 57, 69, 83
BstMBI GATC 4 cut(s) 47, 54, 66, 80
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 47, 54
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 2 cut(s) 47, 54
BsuI GTATCC 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 131, 292, 356
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 22, 401, 427
CviJI RGCY 4 cut(s) 32, 62, 254, 315
CviKI_1 RGCY 4 cut(s) 32, 62, 254, 315
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 49, 56, 68, 82
DpnII GATC 4 cut(s) 47, 54, 66, 80
DriI GACNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 236
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 259
FaeI CATG 3 cut(s) 25, 404, 430
FaiI YATR 4 cut(s) 23, 388, 402, 428
FatI CATG 3 cut(s) 21, 400, 426
FspBI CTAG 1 cut(s) 438
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 3 cut(s) 25, 404, 430
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 52, 234, 378
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 10, 44
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 3 cut(s) 199, 287, 351
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 136, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 25, 404, 430
Kzo9I GATC 4 cut(s) 47, 54, 66, 80
LpnPI CCDG 3 cut(s) 134, 309, 325
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 199
MalI GATC 4 cut(s) 49, 56, 68, 82
MboI GATC 4 cut(s) 47, 54, 66, 80
MboII GAAGA 4 cut(s) 253, 259, 304, 424
MflI RGATCY 2 cut(s) 47, 54
MluCI AATT 2 cut(s) 259, 420
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 208, 237, 240
MseI TTAA 4 cut(s) 308, 372, 396, 416
MspI CCGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeII GATC 4 cut(s) 47, 54, 66, 80
NlaIII CATG 3 cut(s) 25, 404, 430
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 430
NspV TTCGAA 1 cut(s) 257
PfeI GAWTC 1 cut(s) 320
PflFI GACNNNGTC 1 cut(s) 351
Ppu21I YACGTR 1 cut(s) 204
PsuI RGATCY 2 cut(s) 47, 54
PsyI GACNNNGTC 1 cut(s) 351
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 4 cut(s) 308, 372, 396, 416
Sau3AI GATC 4 cut(s) 47, 54, 66, 80
SetI ASST 4 cut(s) 206, 279, 337, 361
SfaNI GCATC 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 257
Sse9I AATT 2 cut(s) 259, 420
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 438
TaaI ACNGT 3 cut(s) 199, 287, 351
TaiI ACGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 79, 179, 191, 257
TasI AATT 2 cut(s) 259, 420
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 4 cut(s) 308, 372, 396, 416
Tru9I TTAA 4 cut(s) 308, 372, 396, 416
TscAI CASTG 3 cut(s) 138, 292, 356
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspRI CASTG 3 cut(s) 138, 292, 356
Tth111I GACNNNGTC 1 cut(s) 351
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.