Rorug04G0024700

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001045
Physical Location & Seq
Forward (+)
3454002 .. 3455356
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0024700.1

Sequence Viewer

Length: 1164 bp
ATGTCATCCTCAGCAGCAGAAGCTGTAGCCAATATCGAAGAGCTCCTTACTCAGATCCTTGTGTCGCTGCCATTACGATCACTTGCTCGTTTCAAGTGCGTCTCCACGCATTGGCTCTCTCTCATCTCCGACCTCCGCACCCTCAAAAACCCCAAGATATCGGCTTTCTTCTCTAGCAAAATCCAAGACGAGTGCTTCAAGTCCATCCCTCTTGGTAACCATGAAATCCCACCTGGGTGGAATCCCTTCAAAACCCTTAACAATTCCGTCCCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTCCTCTGCTATATTCCTATATTTGGTGAACAAAGGAAACATCATCCCGTATATGTTGTTAATCCAACAACCAACCAATTCCGGGCTGTTTCCTCTCCAAGGGTTGGGGAATATATGGACAGATTAGCTTTTGTACGGTATGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGAGCAGGGAACTAGGGAAGGCGCCATATACTGCAACGGCGCAGTTCATTGGATAAGAGAGACAGGGGAAGCAAGATTTTCATTCTGCTTCTTCCCAGGTGGTAGGTTTGAATTCGAAAGAAAGGAAACTGATGTGCTGCACTACTTTGATATAGACCAAGAACGTCTGCTGCTCGTGTCCACTACCCCTCCTGTCCCCTTGGTTGTCAAAAACATTCCGCAGGATTCTGATCCATGGCCCACTGAATGGCCGAGATTGGCTCAAAGATATTTTGGGGAGTCCGGTGGCCATTTGTATTTGATTGAGACTTATAAGAATTGCAAGACCCAATTTGATGTGATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTCATTCGGTATTCACAGCTCTTCCTGATCCGAATGCTTTTGTCATCTTGTGCCTCTCTCAAGAGAAGGAAAAACATGAAGAGGAGGATTCTTCAGCTGATCTTTTGTTGTATATGCCAGATAAGGTCATATCTTATAATCTGAGGAATAAGACCTTCAAGGCATCTGTTGTGGAGTTGGCCAATGAAGAACTTCTTCTTGCTATGGATGGTCGATTCTATAGGGATGAGGTTGTTATGTATCCTTACATGGAGGGTTTAGCTTGTGTGGAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

387

Amino Acids

44.54

Weight (kDa)

5.82

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 807, 1023
AccB1I GGYRCC 1 cut(s) 515
AccB7I CCANNNNNTGG 3 cut(s) 111, 419, 741
AciI CCGC 2 cut(s) 136, 713
AclWI GGATC 5 cut(s) 49, 273, 286, 719, 908
AcoI YGGCCR 3 cut(s) 743, 781, 1065
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 2 cut(s) 281, 963
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 7 cut(s) 111, 288, 338, 397, 414, 419, 741
AgsI TTSAA 5 cut(s) 94, 199, 250, 605, 1045
AjnI CCWGG 2 cut(s) 232, 589
AleI CACNNNNGTG 1 cut(s) 235
AluBI AGCT 6 cut(s) 23, 43, 443, 905, 983, 1148
AluI AGCT 6 cut(s) 23, 43, 443, 905, 983, 1148
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 106, 548, 794
AlwI GGATC 5 cut(s) 49, 273, 286, 719, 908
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 5 cut(s) 310, 731, 743, 781, 1065
ApeKI GCWGC 4 cut(s) 14, 67, 631, 664
ApoI RAATTY 1 cut(s) 605
Asp700I GAANNNNTTC 3 cut(s) 245, 1077, 1080
AspLEI GCGC 2 cut(s) 518, 536
AspS9I GGNCC 1 cut(s) 732
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 353, 474
AsuII TTCGAA 1 cut(s) 609
BalI TGGCCA 2 cut(s) 783, 1067
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 45
BauI CACGAG 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 26, 54, 618, 651
BccI CCATC 5 cut(s) 212, 269, 829, 835, 1088
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 2 cut(s) 234, 591
BciVI GTATCC 1 cut(s) 1137
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 106, 548, 794
BfaI CTAG 2 cut(s) 174, 507
BfmI CTRYAG 2 cut(s) 24, 1105
BfoI RGCGCY 1 cut(s) 519
BfuI GTATCC 1 cut(s) 1137
BisI GCNGC 4 cut(s) 15, 68, 632, 665
BlsI GCNGC 4 cut(s) 16, 69, 633, 666
Bme1390I CCNGG 3 cut(s) 234, 398, 591
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 2 cut(s) 280, 517
BmrFI CCNGG 3 cut(s) 234, 398, 591
BmsI GCATC 1 cut(s) 1058
BplI GAGNNNNNCTC 2 cut(s) 739, 771
Bpu10I CCTNAGC 1 cut(s) 10
Bpu14I TTCGAA 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 930
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 516
BsaJI CCNNGG 5 cut(s) 233, 413, 589, 693, 728
BsaWI WCCGGW 1 cut(s) 776
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 288, 338, 397, 414, 419, 741
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 2 cut(s) 234, 591
BseDI CCNNGG 5 cut(s) 233, 413, 589, 693, 728
BseGI GGATG 5 cut(s) 5, 204, 358, 1099, 1117
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 7 cut(s) 111, 288, 338, 397, 414, 419, 741
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 24, 65, 1019
BseRI GAGGAG 1 cut(s) 983
BseXI GCAGC 4 cut(s) 26, 54, 618, 651
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 5 cut(s) 312, 733, 745, 783, 1067
BshNI GGYRCC 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 397, 777
BslFI GGGAC 3 cut(s) 254, 674, 863
BslI CCNNNNNNNGG 7 cut(s) 111, 288, 338, 397, 414, 419, 741
BsmAI GTCTC 3 cut(s) 106, 548, 794
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 3 cut(s) 254, 674, 863
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 5 cut(s) 312, 733, 745, 783, 1067
Bsp119I TTCGAA 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
Bsp19I CCATGG 1 cut(s) 728
BspACI CCGC 2 cut(s) 136, 713
BspANI GGCC 5 cut(s) 312, 733, 745, 783, 1067
BspCNI CTCAG 3 cut(s) 23, 64, 1020
BspLI GGNNCC 2 cut(s) 280, 517
BspPI GGATC 5 cut(s) 49, 273, 286, 719, 908
BspQI GCTCTTC 2 cut(s) 33, 912
BspT104I TTCGAA 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 5 cut(s) 233, 413, 589, 693, 728
BssMI GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 668
BssT1I CCWWGG 3 cut(s) 413, 693, 728
Bst2BI CACGAG 1 cut(s) 668
Bst2UI CCWGG 2 cut(s) 234, 591
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 4 cut(s) 33, 320, 912, 960
BstACI GRCGYC 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 10, 51, 1028
BstDSI CCRYGG 1 cut(s) 728
BstEII GGTNACC 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 5 cut(s) 5, 204, 358, 1099, 1117
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 2 cut(s) 518, 536
BstKTI GATC 7 cut(s) 57, 80, 281, 727, 886, 916, 988
BstMAI GTCTC 3 cut(s) 106, 548, 794
BstMBI GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 2 cut(s) 234, 591
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 232, 396, 589
BstSFI CTRYAG 2 cut(s) 24, 1105
BstV1I GCAGC 4 cut(s) 26, 54, 618, 651
BstX2I RGATCY 2 cut(s) 54, 278
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 2 cut(s) 54, 278
BsuI GTATCC 1 cut(s) 1137
BsuRI GGCC 5 cut(s) 312, 733, 745, 783, 1067
BtgI CCRYGG 1 cut(s) 728
BtsCI GGATG 5 cut(s) 5, 204, 358, 1099, 1117
BtsIMutI CAGTG 1 cut(s) 735
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 2 cut(s) 518, 536
Cfr13I GGNCC 1 cut(s) 732
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 449
CviAII CATG 5 cut(s) 221, 729, 878, 962, 1135
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 10, 51, 1028
DinI GGCGCC 1 cut(s) 517
DpnI GATC 7 cut(s) 56, 79, 280, 726, 885, 915, 987
DpnII GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
EaeI YGGCCR 3 cut(s) 743, 781, 1065
Eam1104I CTCTTC 4 cut(s) 33, 320, 912, 960
EarI CTCTTC 4 cut(s) 33, 320, 912, 960
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 413, 693, 728
Eco24I GRGCYC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 281, 963
Eco91I GGTNACC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 232, 589
EcoRV GATATC 1 cut(s) 159
EcoT14I CCWWGG 3 cut(s) 413, 693, 728
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 517
EheI GGCGCC 1 cut(s) 517
ErhI CCWWGG 3 cut(s) 413, 693, 728
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 5 cut(s) 224, 732, 881, 965, 1138
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 1065, 1097
FaqI GGGAC 3 cut(s) 254, 674, 863
FatI CATG 5 cut(s) 220, 728, 877, 961, 1134
Fnu4HI GCNGC 4 cut(s) 15, 68, 632, 665
FokI GGATG 4 cut(s) 191, 345, 1106, 1124
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 15, 68, 632, 665
FspBI CTAG 2 cut(s) 174, 507
GlaI GCGC 2 cut(s) 517, 535
GluI GCNGC 4 cut(s) 15, 68, 632, 665
HaeII RGCGCY 1 cut(s) 519
HaeIII GGCC 5 cut(s) 312, 733, 745, 783, 1067
HapII CCGG 2 cut(s) 397, 777
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 518, 536
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 5 cut(s) 224, 732, 881, 965, 1138
Hin6I GCGC 2 cut(s) 516, 534
HinP1I GCGC 2 cut(s) 516, 534
HinfI GANTC 6 cut(s) 241, 292, 719, 773, 974, 1101
HpaII CCGG 2 cut(s) 397, 777
HphI GGTGA 2 cut(s) 353, 474
Hpy166II GTNNAC 2 cut(s) 344, 675
Hpy188I TCNGA 5 cut(s) 54, 130, 724, 918, 1029
Hpy188III TCNNGA 2 cut(s) 911, 947
Hpy8I GTNNAC 2 cut(s) 344, 675
HpyAV CCTTC 5 cut(s) 256, 483, 506, 946, 1051
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 4 cut(s) 306, 528, 634, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 10, 51, 1028
HpySE526I ACGT 1 cut(s) 658
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 5 cut(s) 224, 732, 881, 965, 1138
HspAI GCGC 2 cut(s) 516, 534
KasI GGCGCC 1 cut(s) 515
Kzo9I GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
LguI GCTCTTC 2 cut(s) 33, 912
LmnI GCTCC 2 cut(s) 48, 496
Lsp1109I GCAGC 4 cut(s) 26, 54, 618, 651
LweI GCATC 1 cut(s) 1058
MaeI CTAG 2 cut(s) 174, 507
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 1 cut(s) 215
MalI GATC 7 cut(s) 56, 79, 280, 726, 885, 915, 987
MboI GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
MflI RGATCY 2 cut(s) 54, 278
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 2 cut(s) 783, 1067
MluCI AATT 5 cut(s) 262, 392, 605, 811, 824
MluNI TGGCCA 2 cut(s) 783, 1067
Mly113I GGCGCC 1 cut(s) 516
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 2 cut(s) 153, 404
Mox20I TGGCCA 2 cut(s) 783, 1067
MroXI GAANNNNTTC 3 cut(s) 245, 1077, 1080
MscI TGGCCA 2 cut(s) 783, 1067
MseI TTAA 2 cut(s) 258, 375
MslI CAYNNNNRTG 1 cut(s) 235
Msp20I TGGCCA 2 cut(s) 783, 1067
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 2 cut(s) 397, 777
MspR9I CCNGG 3 cut(s) 234, 398, 591
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 2 cut(s) 234, 591
MwoI GCNNNNNNNGC 1 cut(s) 20
NarI GGCGCC 1 cut(s) 516
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 1 cut(s) 728
NdeII GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
NlaIII CATG 5 cut(s) 224, 732, 881, 965, 1138
NlaIV GGNNCC 2 cut(s) 280, 517
NmeAIII GCCGAG 1 cut(s) 771
NspV TTCGAA 1 cut(s) 609
OliI CACNNNNGTG 1 cut(s) 235
PciSI GCTCTTC 2 cut(s) 33, 912
PctI GAATGC 1 cut(s) 925
PdmI GAANNNNTTC 3 cut(s) 245, 1077, 1080
PfeI GAWTC 5 cut(s) 241, 292, 719, 974, 1101
PflMI CCANNNNNTGG 3 cut(s) 111, 419, 741
PkrI GCNGC 4 cut(s) 16, 69, 633, 666
PleI GAGTC 1 cut(s) 781
PluTI GGCGCC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 781
PsiI TTATAA 2 cut(s) 807, 1023
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 232, 589
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 232, 589
PspN4I GGNNCC 2 cut(s) 280, 517
PspPI GGNCC 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 54, 278
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 235
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 2 cut(s) 33, 912
SaqAI TTAA 2 cut(s) 258, 375
SatI GCNGC 4 cut(s) 15, 68, 632, 665
Sau3AI GATC 7 cut(s) 54, 77, 278, 724, 883, 913, 985
Sau96I GGNCC 1 cut(s) 732
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 3 cut(s) 234, 398, 591
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 1058
SfcI CTRYAG 2 cut(s) 24, 1105
SfoI GGCGCC 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 945
SmoI CTYRAG 1 cut(s) 945
Sse9I AATT 5 cut(s) 262, 392, 605, 811, 824
SsiI CCGC 2 cut(s) 136, 713
SspDI GGCGCC 1 cut(s) 515
SspMI CTAG 2 cut(s) 174, 507
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 3 cut(s) 232, 396, 589
StyI CCWWGG 3 cut(s) 413, 693, 728
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 1 cut(s) 661
TaqI TCGA 3 cut(s) 36, 609, 1099
TasI AATT 5 cut(s) 262, 392, 605, 811, 824
TfiI GAWTC 5 cut(s) 241, 292, 719, 974, 1101
Tru1I TTAA 2 cut(s) 258, 375
Tru9I TTAA 2 cut(s) 258, 375
TscAI CASTG 1 cut(s) 742
TseI GCWGC 4 cut(s) 14, 67, 631, 664
TspDTI ATGAA 6 cut(s) 237, 530, 564, 878, 978, 1086
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 742
Van91I CCANNNNNTGG 3 cut(s) 111, 419, 741
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 605
XmnI GAANNNNTTC 3 cut(s) 245, 1077, 1080
XspI CTAG 2 cut(s) 174, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.