Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

20609342 .. 20618570

Gene Structure 9229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG210300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTGGTCTGCACCTTCTTTGCCTCTATGTTAGGTTTCCTTCTCTGTGTTCTCCGTCGCCGCGATTATGCTGGTGCTGCTGCAATATCAAATGGGATAGCTGAGAGTGATGTGTTGAAATCATTGTCTCAAATCATTGATCCAGACTTCGGGACAGACATCGTCTCGTGTGGATTTGTGAAAGACCTGCAAATCAATGAGGCTTTGGGAGATGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

73

Amino Acids

7.82

Weight (kDa)

4.27

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeS_assembly_P	PF01883	36 - 72	3.5e-06	Iron-sulfur cluster assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	132, 169
AlwI	GGATC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	77, 80
BauI	CACGAG	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	64, 67
BcoDI	GTCTC	2 cut(s)	132, 169
BfuAI	ACCTGC	1 cut(s)	195
BisI	GCNGC	3 cut(s)	61, 78, 81
BlsI	GCNGC	3 cut(s)	62, 79, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	64, 67
Bsh1236I	CGCG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	132, 169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	134
BssMI	GATC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	132, 169
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	64, 67
BveI	ACCTGC	1 cut(s)	195
CviJI	RGCY	2 cut(s)	101, 203
CviKI_1	RGCY	2 cut(s)	101, 203
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	169
FaiI	YATR	2 cut(s)	29, 69
FaqI	GGGAC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	61, 78, 81
Fsp4HI	GCNGC	3 cut(s)	61, 78, 81
GluI	GCNGC	3 cut(s)	61, 78, 81
Hpy188III	TCNNGA	2 cut(s)	143, 151
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	25, 50
HpyCH4V	TGCA	3 cut(s)	12, 83, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	3 cut(s)	57, 156, 200
Lsp1109I	GCAGC	2 cut(s)	64, 67
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	34, 193
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	62, 79, 82
PsyI	GACNNNGTC	1 cut(s)	161
SatI	GCNGC	3 cut(s)	61, 78, 81
Sau3AI	GATC	1 cut(s)	139
SetI	ASST	4 cut(s)	17, 37, 103, 189
SgeI	CNNG	7 cut(s)	74, 84, 155, 163, 178, 180, 199
SsiI	CCGC	1 cut(s)	61
TauI	GCSGC	1 cut(s)	63
TseI	GCWGC	2 cut(s)	77, 80
TspGWI	ACGGA	1 cut(s)	44
Tth111I	GACNNNGTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.