Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041726.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1537

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041726.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

gtcttccatgagatggttagtgctggagtagaaccaaatgttcacacatatggggcactgattgatggttgtggcagagctggggaagtggcaaaggcatttggtgcttatgggataatgaggtctaagaaagtgaagccagatcgagttgtatacaatgcgcttattactgcatgcggtcaatcaggagcagttgaccgtgcttttgatgtcttagacgaaatgaaggcagagacacagcctatagaacctgatcacacaactgttggtgcactaataaaagcatgcgcaaatgctggtcaggttgaaagggcacgtgaagtgtataagatgattcataaatacaagattaagggtagttctgaggtttacaccatagctgttaattgttgcagcctgactggtgattgggactttgcttgcactgtatatgatgacatgatcaggaatggtgtggtccctgatgagatgttcctcagtgcattaatagatgctgctgggcacgctggaaagctagatgctgcctttgaaatcatacaggaagccagaaatcgaggaatacaagttggaactgtatcatatagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

195

Amino Acids

21.01

Weight (kDa)

5.53

Isoelectric Point (pI)

21.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	308, 530
AluBI	AGCT	3 cut(s)	80, 380, 514
AluI	AGCT	3 cut(s)	80, 380, 514
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	393, 494, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	163, 290
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	457
BaeGI	GKGCMC	4 cut(s)	58, 274, 316, 504
BbrPI	CACGTG	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	405, 481, 508
BccI	CCATC	2 cut(s)	7, 59
BclI	TGATCA	2 cut(s)	253, 441
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	3 cut(s)	394, 495, 522
BlsI	GCNGC	3 cut(s)	395, 496, 523
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	459
BmsI	GCATC	2 cut(s)	481, 508
BpmI	CTGGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	354, 490
BseNI	ACTGG	1 cut(s)	406
BseSI	GKGCMC	4 cut(s)	58, 274, 316, 504
BseXI	GCAGC	3 cut(s)	405, 481, 508
BseYI	CCCAGC	2 cut(s)	80, 497
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	2 cut(s)	425, 443
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	425, 443
Bsp1286I	GDGCHC	4 cut(s)	58, 274, 316, 504
Bsp143I	GATC	3 cut(s)	142, 253, 441
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	355, 489
BspLI	GGNNCC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	3 cut(s)	142, 253, 441
BssNAI	GTATAC	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	154
Bst4CI	ACNGT	4 cut(s)	200, 265, 427, 574
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	175, 286, 421, 504
BstDEI	CTNAG	4 cut(s)	126, 214, 363, 476
BstHHI	GCGC	2 cut(s)	163, 290
BstKTI	GATC	3 cut(s)	145, 256, 444
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	142, 253, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 503
BstNSI	RCATGY	2 cut(s)	177, 288
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	4 cut(s)	58, 274, 316, 504
BstV1I	GCAGC	3 cut(s)	405, 481, 508
BstZ17I	GTATAC	1 cut(s)	154
BtsIMutI	CAGTG	3 cut(s)	56, 423, 484
Cac8I	GCNNGC	4 cut(s)	175, 286, 421, 504
CfoI	GCGC	2 cut(s)	163, 290
Cfr13I	GGNCC	1 cut(s)	457
CviAII	CATG	4 cut(s)	8, 174, 285, 439
CviJI	RGCY	7 cut(s)	80, 139, 241, 380, 396, 514, 545
CviKI_1	RGCY	7 cut(s)	80, 139, 241, 380, 396, 514, 545
DdeI	CTNAG	4 cut(s)	126, 214, 363, 476
DpnI	GATC	3 cut(s)	144, 255, 443
DpnII	GATC	3 cut(s)	142, 253, 441
Eco47I	GGWCC	1 cut(s)	457
Eco72I	CACGTG	1 cut(s)	317
FaeI	CATG	4 cut(s)	11, 177, 288, 442
FaqI	GGGAC	2 cut(s)	425, 443
FatI	CATG	4 cut(s)	7, 173, 284, 438
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	2 cut(s)	253, 441
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	394, 495, 522
Fsp4HI	GCNGC	3 cut(s)	394, 495, 522
FspBI	CTAG	1 cut(s)	515
FspI	TGCGCA	1 cut(s)	289
GlaI	GCGC	2 cut(s)	162, 289
GluI	GCNGC	3 cut(s)	394, 495, 522
GsaI	CCCAGC	2 cut(s)	84, 501
GsuI	CTGGAG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	163, 290
Hin1II	CATG	4 cut(s)	11, 177, 288, 442
Hin6I	GCGC	2 cut(s)	161, 288
HinP1I	GCGC	2 cut(s)	161, 288
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	5 cut(s)	43, 154, 196, 272, 370
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	186, 445
Hpy8I	GTNNAC	5 cut(s)	43, 154, 196, 272, 370
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	4 cut(s)	200, 265, 427, 574
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	173, 272, 393, 423, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 503
HpyF3I	CTNAG	4 cut(s)	126, 214, 363, 476
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	11, 177, 288, 442
HspAI	GCGC	2 cut(s)	161, 288
Ksp22I	TGATCA	2 cut(s)	253, 441
Kzo9I	GATC	3 cut(s)	142, 253, 441
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	3 cut(s)	405, 481, 508
LweI	GCATC	2 cut(s)	481, 508
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	316
MalI	GATC	3 cut(s)	144, 255, 443
MboI	GATC	3 cut(s)	142, 253, 441
MhlI	GDGCHC	4 cut(s)	58, 274, 316, 504
MluCI	AATT	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	4 cut(s)	114, 358, 485, 548
MseI	TTAA	3 cut(s)	351, 384, 485
MslI	CAYNNNNRTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	104, 503
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	3 cut(s)	142, 253, 441
NlaIII	CATG	4 cut(s)	11, 177, 288, 442
NlaIV	GGNNCC	1 cut(s)	459
NsbI	TGCGCA	1 cut(s)	289
NspI	RCATGY	2 cut(s)	177, 288
PaeI	GCATGC	2 cut(s)	177, 288
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	395, 496, 523
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	485
PspCI	CACGTG	1 cut(s)	317
PspFI	CCCAGC	2 cut(s)	80, 497
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	351, 384, 485
SatI	GCNGC	3 cut(s)	394, 495, 522
Sau3AI	GATC	3 cut(s)	142, 253, 441
Sau96I	GGNCC	1 cut(s)	457
SduI	GDGCHC	4 cut(s)	58, 274, 316, 504
SetI	ASST	8 cut(s)	82, 125, 253, 306, 319, 369, 382, 516
SfaNI	GCATC	2 cut(s)	481, 508
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	2 cut(s)	177, 288
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	515
TaaI	ACNGT	4 cut(s)	200, 265, 427, 574
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	145, 553
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	351, 384, 485
Tru9I	TTAA	3 cut(s)	351, 384, 485
TscAI	CASTG	3 cut(s)	63, 430, 484
TseI	GCWGC	3 cut(s)	393, 494, 521
TspDTI	ATGAA	2 cut(s)	239, 326
TspRI	CASTG	3 cut(s)	63, 430, 484
Van91I	CCANNNNNTGG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	485
XceI	RCATGY	2 cut(s)	177, 288
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.