Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

48623224 .. 48633310

Gene Structure 10087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGATCGATCGGCGAGCTTGTTCGAACTCAATCAAAGAAACCCGAAGCTTTGCCGACGTCGGAGCTGCATTTTCCGGCCGGGTCGTGTTTCCTCCAACCGTGCAGCTTTGCAGCGCCGCCGTGGGCACGAATCGTCGACGGAGACCACCACGGAGACGACCGGAGCAAGGAGACGACCCATTCGGAAAGTTTCGTCGCCGGAGGTGGCCGGAGCTGCGAGTTCCGACCGGGTCGGATCACCGGGTCCGGGAACTGATTACTTTTCCATTGCTACCTATGATGAAGCTATTCCGGCTCATATTGCTTTTCTAAAGGGAAGGGTTTGCAAATCCATGAAATTTCTAGTTAGTGGTGCTTCCTTGAAGGTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACGATTGATGGTTGTGGCAGAGCTGGCATGGAGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGTTTGAGCAAAAGGCAAATGAGGTGGTGATCGAGCTTCCTTGGGTCAAGAATGTCATTGTGACTATGTCAGCACAACCTGCACAACCCCTTTATGCCGGGCAACTTCCTCAAGAGTTACAGACAATTTCAAATATTGTGGCAGTTTCTAGTTACAAGGTTGTGTTGAGGAAGCAACTTTATAAAGATGAGGATTATGTGCCTACATTGTTTGACAACATCGGTGCTAATTTGGTGGCGGATGCACGATTAACCTTGGATTGTGGGACACTGCAGGCTGCCGACATGCTGCGCGCCATGCTGCCGAGCCCTTCACACGACGGTTCCCTACATCGATCTTCATCGGACGGTGTCTCGATAGACGACGCTTTGCCTCCGTATCGACGACGGTTTTTGCCTTCGTCTGATTCAATTTTTGTAGTAGTGATATTGAAAAGCAAGATCAATGAATTTGTCCCTATTGCGAAGGGAACAAAAGGCGTCCATGATTCGAGAGTAATCTTTTCTCAAAACCCATCTGAAGAGCTGGAAACAAAGCCATTTAGTCGCAGCAAGGATCATGAACAAGATCATACTAAGCTCCCTGCTATGAAGAATGCACTTCAAATTATGAGAAAGAAGCTCAGTTGCTCAAATCTGGCCAGCAGAAAATTGCTTGCCTGGCTTCAAACACATGGCACCGAAGCTCGTCAAAAGGAAATCGTACCTGTGGAAGGCCTAAAGCTTGATGGCATAAAACCAGGAAATTATTCTGTGCATTGCTTACCTTTAAGTCATCTTATTGCTGTTACTTCTTTGGAACAGACTCGCTCAGCTGTGATCAACAATTTTAAAATGGTAGACTCAGTAGAAAGTGATGGCATTGCGAAGGTTGGGTGTCAGGAAGTGTTTATATGCAATAAAGCAAGGTTCTGTTCCAATGAGGCCATGACAGCAGCAAAGCTAGACTCCTTAAGTAAATTTCTGGATGTATATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

488

Amino Acids

53.94

Weight (kDa)

9.18

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AatII	GACGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	1163
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccI	GTMKAC	2 cut(s)	137, 1326
AccII	CGCG	1 cut(s)	780
AciI	CCGC	2 cut(s)	118, 725
AclWI	GGATC	3 cut(s)	12, 244, 1050
AcoI	YGGCCR	3 cut(s)	77, 207, 1125
AcsI	RAATTY	3 cut(s)	338, 935, 1445
AcuI	CTGAAG	1 cut(s)	1026
AcyI	GRCGYC	2 cut(s)	58, 966
AfaI	GTAC	1 cut(s)	1191
AfiI	CCNNNNNNNGG	4 cut(s)	168, 248, 376, 1199
AflII	CTTAAG	1 cut(s)	1438
AgsI	TTSAA	6 cut(s)	364, 618, 897, 919, 1091, 1154
AjnI	CCWGG	2 cut(s)	1145, 1225
Alw26I	GTCTC	4 cut(s)	137, 149, 166, 844
AlwI	GGATC	3 cut(s)	12, 244, 1050
AoxI	GGCC	5 cut(s)	77, 207, 1125, 1201, 1410
ApeKI	GCWGC	9 cut(s)	66, 104, 112, 215, 764, 775, 787, 1035, 1421
ApoI	RAATTY	3 cut(s)	338, 935, 1445
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	2 cut(s)	288, 1234
AspLEI	GCGC	3 cut(s)	117, 780, 782
AspS9I	GGNCC	2 cut(s)	245, 367
AsuC2I	CCSGG	5 cut(s)	81, 230, 243, 249, 586
AsuHPI	GGTGA	2 cut(s)	231, 526
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	245, 367
BaeGI	GKGCMC	2 cut(s)	129, 421
BalI	TGGCCA	1 cut(s)	1127
BanI	GGYRCC	1 cut(s)	1163
BanII	GRGCYC	1 cut(s)	797
BbvI	GCAGC	9 cut(s)	53, 116, 124, 202, 751, 762, 774, 1047, 1433
BccI	CCATC	5 cut(s)	370, 421, 1009, 1208, 1337
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	1147, 1227
BclI	TGATCA	1 cut(s)	1305
BcnI	CCSGG	5 cut(s)	81, 230, 243, 249, 586
BcoDI	GTCTC	4 cut(s)	137, 149, 166, 844
BfaI	CTAG	4 cut(s)	344, 636, 1430, 1465
BfmI	CTRYAG	1 cut(s)	758
BfoI	RGCGCY	1 cut(s)	118
BfrI	CTTAAG	1 cut(s)	1438
BfuAI	ACCTGC	1 cut(s)	574
BlpI	GCTNAGC	1 cut(s)	1297
Bme1390I	CCNGG	7 cut(s)	81, 230, 243, 249, 586, 1147, 1227
Bme18I	GGWCC	2 cut(s)	245, 367
BmgT120I	GGNCC	2 cut(s)	245, 367
BmiI	GGNNCC	3 cut(s)	246, 811, 1165
BmrFI	CCNGG	7 cut(s)	81, 230, 243, 249, 586, 1147, 1227
BmsI	GCATC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	1297
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	582
BpuMI	CCSGG	5 cut(s)	81, 230, 243, 249, 586
Bsa29I	ATCGAT	2 cut(s)	7, 820
BsaBI	GATNNNNATC	1 cut(s)	826
BsaHI	GRCGYC	2 cut(s)	58, 966
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	121, 150, 527, 741
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 248, 376, 1199
Bse3DI	GCAATG	3 cut(s)	267, 1243, 1347
Bse8I	GATNNNNATC	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	1147, 1227
BseCI	ATCGAT	2 cut(s)	7, 820
BseDI	CCNNGG	4 cut(s)	121, 150, 527, 741
BseGI	GGATG	2 cut(s)	733, 1459
BseJI	GATNNNNATC	1 cut(s)	826
BseLI	CCNNNNNNNGG	4 cut(s)	168, 248, 376, 1199
BseMI	GCAATG	3 cut(s)	267, 1243, 1347
BseMII	CTCAG	3 cut(s)	1123, 1311, 1344
BsePI	GCGCGC	1 cut(s)	778
BseSI	GKGCMC	2 cut(s)	129, 421
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	9 cut(s)	53, 116, 124, 202, 751, 762, 774, 1047, 1433
BsgI	GTGCAG	2 cut(s)	123, 552
Bsh1236I	CGCG	1 cut(s)	780
Bsh1285I	CGRYCG	4 cut(s)	11, 80, 162, 229
BshFI	GGCC	5 cut(s)	79, 209, 1127, 1203, 1412
BshNI	GGYRCC	1 cut(s)	1163
BshVI	ATCGAT	2 cut(s)	7, 820
BsiEI	CGRYCG	4 cut(s)	11, 80, 162, 229
BslFI	GGGAC	2 cut(s)	766, 926
BslI	CCNNNNNNNGG	4 cut(s)	168, 248, 376, 1199
BsmAI	GTCTC	4 cut(s)	137, 149, 166, 844
BsmBI	CGTCTC	2 cut(s)	149, 166
BsmFI	GGGAC	2 cut(s)	766, 926
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	5 cut(s)	79, 209, 1127, 1203, 1412
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	129, 421, 797
Bsp143I	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
Bsp1720I	GCTNAGC	1 cut(s)	1297
BspACI	CCGC	2 cut(s)	118, 725
BspANI	GGCC	5 cut(s)	79, 209, 1127, 1203, 1412
BspCNI	CTCAG	3 cut(s)	1122, 1310, 1343
BspDI	ATCGAT	2 cut(s)	7, 820
BspFNI	CGCG	1 cut(s)	780
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	3 cut(s)	246, 811, 1165
BspMAI	CTGCAG	1 cut(s)	762
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	3 cut(s)	12, 244, 1050
BspQI	GCTCTTC	1 cut(s)	1002
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	1163
BspTI	CTTAAG	1 cut(s)	1438
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	3 cut(s)	267, 1243, 1347
BssECI	CCNNGG	4 cut(s)	121, 150, 527, 741
BssHII	GCGCGC	1 cut(s)	778
BssMI	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
BssNI	GRCGYC	2 cut(s)	58, 966
BssT1I	CCWWGG	2 cut(s)	527, 741
Bst2UI	CCWGG	2 cut(s)	1147, 1227
Bst4CI	ACNGT	4 cut(s)	101, 809, 836, 876
Bst6I	CTCTTC	1 cut(s)	1002
BstACI	GRCGYC	2 cut(s)	58, 966
BstAFI	CTTAAG	1 cut(s)	1438
BstAPI	GCANNNNNTGC	2 cut(s)	471, 566
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	6 cut(s)	16, 444, 762, 780, 1129, 1143
BstDEI	CTNAG	4 cut(s)	1062, 1109, 1297, 1330
BstDSI	CCRYGG	2 cut(s)	121, 150
BstENI	CCTNNNNNAGG	1 cut(s)	1197
BstF5I	GGATG	2 cut(s)	733, 1459
BstFNI	CGCG	1 cut(s)	780
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	3 cut(s)	117, 780, 782
BstKTI	GATC	9 cut(s)	7, 11, 239, 519, 824, 930, 1045, 1057, 1308
BstMAI	GTCTC	4 cut(s)	137, 149, 166, 844
BstMBI	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
BstMCI	CGRYCG	4 cut(s)	11, 80, 162, 229
BstMWI	GCNNNNNNNGC	9 cut(s)	215, 293, 302, 443, 471, 566, 784, 1147, 1418
BstNI	CCWGG	2 cut(s)	1147, 1227
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	7 cut(s)	79, 228, 241, 247, 584, 1145, 1225
BstSFI	CTRYAG	1 cut(s)	758
BstSLI	GKGCMC	2 cut(s)	129, 421
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	9 cut(s)	53, 116, 124, 202, 751, 762, 774, 1047, 1433
BstZI	CGGCCG	1 cut(s)	77
Bsu15I	ATCGAT	2 cut(s)	7, 820
BsuRI	GGCC	5 cut(s)	79, 209, 1127, 1203, 1412
BsuTUI	ATCGAT	2 cut(s)	7, 820
BtgI	CCRYGG	2 cut(s)	121, 150
BtsCI	GGATG	2 cut(s)	733, 1459
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	1 cut(s)	755
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	6 cut(s)	16, 444, 762, 780, 1129, 1143
CciI	TCATGA	1 cut(s)	1045
CfoI	GCGC	3 cut(s)	117, 780, 782
Cfr13I	GGNCC	2 cut(s)	245, 367
ClaI	ATCGAT	2 cut(s)	7, 820
CseI	GACGC	2 cut(s)	860, 955
Csp6I	GTAC	1 cut(s)	1190
CspCI	CAANNNNNGTGG	4 cut(s)	492, 527, 606, 641
CviAII	CATG	9 cut(s)	334, 371, 447, 772, 784, 971, 1046, 1160, 1414
CviQI	GTAC	1 cut(s)	1190
DdeI	CTNAG	4 cut(s)	1062, 1109, 1297, 1330
DpnI	GATC	9 cut(s)	6, 10, 238, 518, 823, 929, 1044, 1056, 1307
DpnII	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
DraI	TTTAAA	1 cut(s)	1318
EaeI	YGGCCR	3 cut(s)	77, 207, 1125
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
EciI	GGCGGA	1 cut(s)	740
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	527, 741
Eco147I	AGGCCT	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	245, 367
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	1026
EcoNI	CCTNNNNNAGG	1 cut(s)	1197
EcoRII	CCWGG	2 cut(s)	1145, 1225
EcoT14I	CCWWGG	2 cut(s)	527, 741
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	2 cut(s)	527, 741
Esp3I	CGTCTC	2 cut(s)	149, 166
FaeI	CATG	9 cut(s)	337, 374, 450, 775, 787, 974, 1049, 1163, 1417
FaqI	GGGAC	2 cut(s)	766, 926
FatI	CATG	9 cut(s)	333, 370, 446, 771, 783, 970, 1045, 1159, 1413
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	1305
FblI	GTMKAC	2 cut(s)	137, 1326
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	797
FspBI	CTAG	4 cut(s)	344, 636, 1430, 1465
GlaI	GCGC	3 cut(s)	116, 779, 781
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	5 cut(s)	79, 209, 1127, 1203, 1412
HgaI	GACGC	2 cut(s)	860, 955
HhaI	GCGC	3 cut(s)	117, 780, 782
Hin1I	GRCGYC	2 cut(s)	58, 966
Hin1II	CATG	9 cut(s)	337, 374, 450, 775, 787, 974, 1049, 1163, 1417
Hin6I	GCGC	3 cut(s)	115, 778, 780
HinP1I	GCGC	3 cut(s)	115, 778, 780
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	2 cut(s)	47, 1208
HinfI	GANTC	6 cut(s)	131, 893, 974, 1291, 1328, 1433
HphI	GGTGA	2 cut(s)	231, 526
Hpy166II	GTNNAC	3 cut(s)	138, 406, 1327
Hpy188I	TCNGA	7 cut(s)	63, 186, 226, 236, 832, 892, 1006
Hpy188III	TCNNGA	7 cut(s)	535, 599, 841, 978, 1046, 1367, 1451
Hpy8I	GTNNAC	3 cut(s)	138, 406, 1327
Hpy99I	CGWCG	9 cut(s)	60, 63, 139, 142, 199, 809, 854, 873, 876
HpyAV	CCTTC	7 cut(s)	312, 358, 807, 894, 946, 1193, 1348
HpyCH4III	ACNGT	4 cut(s)	101, 809, 836, 876
HpyCH4IV	ACGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	9 cut(s)	215, 293, 302, 443, 471, 566, 784, 1147, 1418
HpyF3I	CTNAG	4 cut(s)	1062, 1109, 1297, 1330
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	2 cut(s)	58, 966
Hsp92II	CATG	9 cut(s)	337, 374, 450, 775, 787, 974, 1049, 1163, 1417
HspAI	GCGC	3 cut(s)	115, 778, 780
Ksp22I	TGATCA	1 cut(s)	1305
Kzo9I	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	4 cut(s)	63, 164, 212, 1071
Lsp1109I	GCAGC	9 cut(s)	53, 116, 124, 202, 751, 762, 774, 1047, 1433
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	344, 636, 1430, 1465
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	4 cut(s)	547, 603, 638, 1273
MalI	GATC	9 cut(s)	6, 10, 238, 518, 823, 929, 1044, 1056, 1307
MboI	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
MboII	GAAGA	3 cut(s)	816, 1019, 1090
MhlI	GDGCHC	3 cut(s)	129, 421, 797
MlsI	TGGCCA	1 cut(s)	1127
MluNI	TGGCCA	1 cut(s)	1127
MlyI	GAGTC	3 cut(s)	1285, 1322, 1427
MmeI	TCCRAC	4 cut(s)	41, 120, 214, 249
MnlI	CCTC	8 cut(s)	103, 196, 502, 606, 648, 670, 870, 1402
Mox20I	TGGCCA	1 cut(s)	1127
MroXI	GAANNNNTTC	2 cut(s)	288, 1234
MscI	TGGCCA	1 cut(s)	1127
MseI	TTAA	4 cut(s)	737, 1256, 1317, 1439
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	1127
MspA1I	CMGCKG	1 cut(s)	1301
MspCI	CTTAAG	1 cut(s)	1438
MspR9I	CCNGG	7 cut(s)	81, 230, 243, 249, 586, 1147, 1227
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	2 cut(s)	1147, 1227
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	9 cut(s)	215, 293, 302, 443, 471, 566, 784, 1147, 1418
NciI	CCSGG	5 cut(s)	81, 230, 243, 249, 586
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
NlaIII	CATG	9 cut(s)	337, 374, 450, 775, 787, 974, 1049, 1163, 1417
NlaIV	GGNNCC	3 cut(s)	246, 811, 1165
NmeAIII	GCCGAG	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	24
PagI	TCATGA	1 cut(s)	1045
PauI	GCGCGC	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	1203
PciSI	GCTCTTC	1 cut(s)	1002
PctI	GAATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	2 cut(s)	288, 1234
PfeI	GAWTC	3 cut(s)	131, 893, 974
PflFI	GACNNNGTC	3 cut(s)	230, 553, 836
PflMI	CCANNNNNTGG	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	247
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	3 cut(s)	1285, 1322, 1427
PpsI	GAGTC	3 cut(s)	1285, 1322, 1427
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	2 cut(s)	1145, 1225
PspGI	CCWGG	2 cut(s)	1145, 1225
PspN4I	GGNNCC	3 cut(s)	246, 811, 1165
PspPI	GGNCC	2 cut(s)	245, 367
PstI	CTGCAG	1 cut(s)	762
PsyI	GACNNNGTC	3 cut(s)	230, 553, 836
PteI	GCGCGC	1 cut(s)	778
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	1301
RsaI	GTAC	1 cut(s)	1191
RsaNI	GTAC	1 cut(s)	1190
RseI	CAYNNNNRTG	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	4 cut(s)	737, 1256, 1317, 1439
Sau3AI	GATC	9 cut(s)	4, 8, 236, 516, 821, 927, 1042, 1054, 1305
Sau96I	GGNCC	2 cut(s)	245, 367
SchI	GAGTC	3 cut(s)	1285, 1322, 1427
ScrFI	CCNGG	7 cut(s)	81, 230, 243, 249, 586, 1147, 1227
SduI	GDGCHC	3 cut(s)	129, 421, 797
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	758
SfuI	TTCGAA	1 cut(s)	24
SgrDI	CGTCGACG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	245, 367
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	597, 1438
SmoI	CTYRAG	2 cut(s)	597, 1438
SseBI	AGGCCT	1 cut(s)	1203
SsiI	CCGC	2 cut(s)	118, 725
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	4 cut(s)	344, 636, 1430, 1465
StuI	AGGCCT	1 cut(s)	1203
StyD4I	CCNGG	7 cut(s)	79, 228, 241, 247, 584, 1145, 1225
StyI	CCWWGG	2 cut(s)	527, 741
TaaI	ACNGT	4 cut(s)	101, 809, 836, 876
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	8 cut(s)	7, 24, 137, 519, 820, 842, 868, 977
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	131, 893, 974
Tru1I	TTAA	4 cut(s)	737, 1256, 1317, 1439
Tru9I	TTAA	4 cut(s)	737, 1256, 1317, 1439
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	9 cut(s)	66, 104, 112, 215, 764, 775, 787, 1035, 1421
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	6 cut(s)	297, 350, 816, 948, 1062, 1091
TspGWI	ACGGA	3 cut(s)	155, 167, 852
TspRI	CASTG	1 cut(s)	762
Tth111I	GACNNNGTC	3 cut(s)	230, 553, 836
Van91I	CCANNNNNTGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	1438
VpaK11BI	GGWCC	2 cut(s)	245, 367
XagI	CCTNNNNNAGG	1 cut(s)	1197
XapI	RAATTY	3 cut(s)	338, 935, 1445
XceI	RCATGY	1 cut(s)	775
XmiI	GTMKAC	2 cut(s)	137, 1326
XmnI	GAANNNNTTC	2 cut(s)	288, 1234
XspI	CTAG	4 cut(s)	344, 636, 1430, 1465
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.