Rroxscaffold_5G00341620

UPF0505 protein C16orf62 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001045
Physical Location & Seq
Reverse (-)
10146871 .. 10153176
6306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341620.1

Sequence Viewer

Length: 639 bp
ATGAATATGGATGAACTTTTACGAGAGCGGATGACACTAAGAATGAGAGTGAAGATTTTTTGTGCTGTTGTTTCTCTGTTAGCGGCACTATCTCAACGATATCTGCCTTATCATGCTGATAAGGGAAAGGTACATAGTGAAGGCCTTGGAACAAAATCCAAGCTTCTAGGAAATGACATACTGTTCTTTGGTCATTCATCGTATTTAAGTGAGATTACCTTGATATGCAAGTTTGTTCTTCAGAACCTGGTTGATACTATTCAACAAGAACCTTCCAAGGCTGCTCGTGGAAGTATGGCGCTTGAACTTGCAACTGCATCGCATCATCTTTCATTAGGAAATTTTGATAGACTTTTTGAAATCTTTGGTTGGAGGCTGGAAAATTATTGGAGTTTGGCTTTGGATAAATTGAAGAATATGGATGGCCTTCAAGCAGTAAGGAAGCACATTCGGAAGTGGAACAGGACCTTGAGTTGCTTAAAGCACATGCTAAAAGAAAAGTTGAATTTAGTTATGATGCTATTGAAGAAACTCCAGAAGATATTGAGAGTGTTGAGTCCGGGAGCACCTCAAACTTCAAGCTCTTTAGACCCCCATGAGGCCATGAGAACAGCAAAGCTTGCAAAGTCTACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps35

Protein Analysis

212

Amino Acids

24.16

Weight (kDa)

9.9

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 629
AciI CCGC 2 cut(s) 28, 83
AcsI RAATTY 2 cut(s) 340, 505
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 598
AgsI TTSAA 8 cut(s) 263, 305, 359, 412, 431, 505, 526, 579
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 163, 582, 619
AluI AGCT 3 cut(s) 163, 582, 619
Alw21I GWGCWC 1 cut(s) 568
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 3 cut(s) 142, 424, 600
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 2 cut(s) 340, 505
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 465
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 561
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 302
BisI GCNGC 2 cut(s) 84, 282
BlsI GCNGC 2 cut(s) 85, 283
Bme1390I CCNGG 2 cut(s) 248, 561
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 248, 561
BmsI GCATC 3 cut(s) 326, 331, 507
BpmI CTGGAG 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 145, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 145, 276
BseGI GGATG 3 cut(s) 16, 36, 427
BseLI CCNNNNNNNGG 1 cut(s) 598
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 3 cut(s) 144, 426, 602
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 598
BsnI GGCC 3 cut(s) 144, 426, 602
Bsp1286I GDGCHC 1 cut(s) 568
BspACI CCGC 2 cut(s) 28, 83
BspANI GGCC 3 cut(s) 144, 426, 602
BsrBI CCGCTC 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 145, 276
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 145, 276
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 16, 36, 427
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 246, 559
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 3 cut(s) 144, 426, 602
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 3 cut(s) 16, 36, 427
Cac8I GCNNGC 1 cut(s) 621
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 465
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 131
CviAII CATG 4 cut(s) 113, 487, 596, 604
CviJI RGCY 9 cut(s) 144, 163, 281, 376, 398, 426, 582, 602, 619
CviKI_1 RGCY 9 cut(s) 144, 163, 281, 376, 398, 426, 582, 602, 619
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 145, 276
Eco147I AGGCCT 1 cut(s) 144
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 145, 276
ErhI CCWWGG 2 cut(s) 145, 276
FaeI CATG 4 cut(s) 116, 490, 599, 607
FatI CATG 4 cut(s) 112, 486, 595, 603
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 84, 282
FokI GGATG 3 cut(s) 23, 43, 434
Fsp4HI GCNGC 2 cut(s) 84, 282
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 300
GluI GCNGC 2 cut(s) 84, 282
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 3 cut(s) 144, 426, 602
HapII CCGG 1 cut(s) 560
HhaI GCGC 1 cut(s) 301
Hin1II CATG 4 cut(s) 116, 490, 599, 607
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HindIII AAGCTT 2 cut(s) 161, 617
HinfI GANTC 1 cut(s) 556
HpaII CCGG 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 2 cut(s) 243, 453
Hpy188III TCNNGA 1 cut(s) 535
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 3 cut(s) 134, 282, 437
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 228, 311, 317, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 4 cut(s) 116, 490, 599, 607
HspAI GCGC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 563
LpnPI CCDG 6 cut(s) 233, 260, 362, 448, 548, 573
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 326, 331, 507
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 1 cut(s) 167
MbiI CCGCTC 1 cut(s) 28
MboII GAAGA 5 cut(s) 64, 230, 424, 538, 550
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 4 cut(s) 340, 382, 407, 505
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 3 cut(s) 366, 579, 592
MseI TTAA 3 cut(s) 206, 479, 637
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 248, 561
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 620
NciI CCSGG 1 cut(s) 561
NlaIII CATG 4 cut(s) 116, 490, 599, 607
NspI RCATGY 1 cut(s) 490
PceI AGGCCT 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 2 cut(s) 85, 283
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 1 cut(s) 465
PspPPI RGGWCCY 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 247
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 206, 479, 637
SatI GCNGC 2 cut(s) 84, 282
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 248, 561
SduI GDGCHC 1 cut(s) 568
SetI ASST 9 cut(s) 132, 165, 221, 249, 274, 470, 571, 584, 621
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 3 cut(s) 326, 331, 507
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 4 cut(s) 340, 382, 407, 505
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 2 cut(s) 28, 83
SspMI CTAG 1 cut(s) 167
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 246, 559
StyI CCWWGG 2 cut(s) 145, 276
TaaI ACNGT 1 cut(s) 183
TasI AATT 4 cut(s) 340, 382, 407, 505
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 206, 479, 637
Tru9I TTAA 3 cut(s) 206, 479, 637
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 17, 27, 186, 321
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 2 cut(s) 340, 505
XceI RCATGY 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 629
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.