Rh4DG393700

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001045
Physical Location & Seq
Forward (+)
61001928 .. 61002269
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG393700.1

Sequence Viewer

Length: 240 bp
ATGGCGACGAATATCGGCATGATGGACGGTGCTTACTTCGTCAGTAGATCTGAGATCTTGGCTTGGATCAACTCCACTCAATCTCCAACTCCATCTAAACAAAGTCAAAGAGGCGTGTTCCGGTGCGGTTCACTGCACTCTCTCCCACTTTCACAATGGCCACCGTCTTCTTCTTCTCCTCATATACCTAAGGGTTTCGTTTCTCTTCCTCGCTATTCTCATACAGTAACTGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

10.02

Isoelectric Point (pI)

75.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 158
AlwI GGATC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 189
BalI TGGCCA 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 159
BccI CCATC 2 cut(s) 16, 100
BglII AGATCT 2 cut(s) 47, 54
BpiI GAAGAC 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bse1I ACTGG 1 cut(s) 235
Bse21I CCTNAGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 47, 54, 66
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 235
BssMI GATC 3 cut(s) 47, 54, 66
Bst4CI ACNGT 3 cut(s) 29, 165, 226
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 51, 189
BstKTI GATC 3 cut(s) 50, 57, 69
BstMBI GATC 3 cut(s) 47, 54, 66
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 47, 54
BstYI RGATCY 2 cut(s) 47, 54
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
CaiI CAGNNNCTG 1 cut(s) 230
CviAII CATG 1 cut(s) 19
CviJI RGCY 2 cut(s) 62, 160
CviKI_1 RGCY 2 cut(s) 62, 160
DdeI CTNAG 2 cut(s) 51, 189
DpnI GATC 3 cut(s) 49, 56, 68
DpnII GATC 3 cut(s) 47, 54, 66
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco81I CCTNAGG 1 cut(s) 189
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 183, 185, 222, 238
FatI CATG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 121
Hin1II CATG 1 cut(s) 22
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 3 cut(s) 29, 165, 226
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 2 cut(s) 51, 189
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 3 cut(s) 47, 54, 66
LpnPI CCDG 2 cut(s) 134, 216
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 49, 56, 68
MboI GATC 3 cut(s) 47, 54, 66
MboII GAAGA 4 cut(s) 159, 162, 165, 197
MflI RGATCY 2 cut(s) 47, 54
MlsI TGGCCA 1 cut(s) 160
MluNI TGGCCA 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 104, 189, 219
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 160
MspI CCGG 1 cut(s) 121
NdeII GATC 3 cut(s) 47, 54, 66
NlaIII CATG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 47, 54
Sau3AI GATC 3 cut(s) 47, 54, 66
SetI ASST 1 cut(s) 190
SgeI CNNG 6 cut(s) 31, 70, 75, 127, 133, 222
SsiI CCGC 1 cut(s) 126
TaaI ACNGT 3 cut(s) 29, 165, 226
TscAI CASTG 1 cut(s) 138
TspRI CASTG 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.