Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

46847044 .. 46859326

Gene Structure 12283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG364300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTCTCTCAGATGCGCCCCAGAAATGGTTTCAGCTCAAATCCTCAAATAAGCATTCATTCAGTGCTCTGTCTTTTCATGGCGCAGTTCATGGTTGTATTCTAGAATTACTGAACAAGAAACTTGAAAACCAGAAATGGGTATCACGAAGAGGCACTGTGTTGAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGCTAGTGCTGCTGCAGTATCAAATGGGATAGCTGAGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCAGACTTCGAGACAGACATCGTCTCGTGTGGATTTGTGAAAGACCTACAAATCAATGAGGCTTTGGGAGAGTTTGAGCAAAAGGTAAATCATGAGGTGGTGAACGAGCTTCCTTGGGTCAAGAATGTCAATGTGACTGTGTCAGCACAACCTGCAAAACCCCTTTATACTGGGCAACTTCCAGCAGGGTTACGGACAATTTTAAATATTGTGGCAGTTTCTAGTTGCAAGGGATTGATTGTTGTTATTAAACCTTCTGATGATGGGGAGAGCTGGATTACCTTGTTGTTGACATGCCCCCTGCAGTTGGTAATATTTAGGTTACTTTGTGCCAGTCATCTTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACGGGAGGTGCTTGGCAGCAAAGGGTGAAGTGTCTGGTGAATGTGAAAGATTTTCCAAATATTATCATTCGCTTAGCCCAGTTTGAAGAATATCGTGGTGGTATTAGGAAGACTGAGGTGAAGACCCCTCACTGTTTACTGCAGCTTCTGTTGGGTGAGGTTTTTGGTGCTGAGTTTGTTTTGGATAGCTTCCCAGGTTCATGTGCTTACTTCCATTTTGAATTTTGGGATTGGTCAGCTGATGCACAAGTGCACGTTAGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

308

Amino Acids

34.04

Weight (kDa)

6.71

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	881
AfiI	CCNNNNNNNGG	3 cut(s)	27, 139, 577
AgsI	TTSAA	3 cut(s)	128, 746, 881
AjnI	CCWGG	1 cut(s)	853
Alw21I	GWGCWC	3 cut(s)	70, 170, 915
Alw26I	GTCTC	4 cut(s)	11, 261, 275, 298
Alw44I	GTGCAC	1 cut(s)	911
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	808
ApaLI	GTGCAC	1 cut(s)	911
ApeKI	GCWGC	5 cut(s)	185, 206, 209, 676, 802
ApoI	RAATTY	1 cut(s)	881
AspLEI	GCGC	2 cut(s)	19, 86
AsuHPI	GGTGA	5 cut(s)	382, 697, 709, 790, 827
BaeGI	GKGCMC	1 cut(s)	915
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	776, 788
Bbv12I	GWGCWC	3 cut(s)	70, 170, 915
BbvI	GCAGC	5 cut(s)	172, 193, 196, 688, 814
BccI	CCATC	2 cut(s)	527, 634
BceAI	ACGGC	1 cut(s)	906
BciT130I	CCWGG	1 cut(s)	855
BcoDI	GTCTC	4 cut(s)	11, 261, 275, 298
BfaI	CTAG	3 cut(s)	104, 201, 492
BfmI	CTRYAG	3 cut(s)	210, 572, 800
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	5 cut(s)	186, 207, 210, 677, 803
BlpI	GCTNAGC	1 cut(s)	733
BlsI	GCNGC	5 cut(s)	187, 208, 211, 678, 804
Bme1390I	CCNGG	1 cut(s)	855
BmrFI	CCNGG	1 cut(s)	855
BmrI	ACTGGG	2 cut(s)	450, 733
BmsI	GCATC	2 cut(s)	4, 892
BmuI	ACTGGG	2 cut(s)	450, 733
BpiI	GAAGAC	2 cut(s)	776, 788
Bpu1102I	GCTNAGC	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	383, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 139, 577
Bse1I	ACTGG	3 cut(s)	445, 603, 739
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	2 cut(s)	383, 853
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	3 cut(s)	27, 139, 577
BseMII	CTCAG	4 cut(s)	24, 222, 765, 822
BseNI	ACTGG	3 cut(s)	445, 603, 739
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	5 cut(s)	172, 193, 196, 688, 814
BsiHKAI	GWGCWC	3 cut(s)	70, 170, 915
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	27, 139, 577
BsmAI	GTCTC	4 cut(s)	11, 261, 275, 298
BsmBI	CGTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	70, 170, 915
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	733
BspCNI	CTCAG	4 cut(s)	23, 223, 766, 823
BspHI	TCATGA	1 cut(s)	361
BspMAI	CTGCAG	3 cut(s)	214, 576, 804
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	445, 603, 739
BssECI	CCNNGG	2 cut(s)	383, 853
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	3 cut(s)	160, 409, 794
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	5 cut(s)	10, 231, 733, 774, 831
BstF5I	GGATG	1 cut(s)	626
BstHHI	GCGC	2 cut(s)	19, 86
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	4 cut(s)	11, 261, 275, 298
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 422
BstNI	CCWGG	1 cut(s)	855
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	853
BstSFI	CTRYAG	3 cut(s)	210, 572, 800
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	5 cut(s)	172, 193, 196, 688, 814
BstV2I	GAAGAC	2 cut(s)	776, 788
BtsCI	GGATG	1 cut(s)	626
BtsIMutI	CAGTG	3 cut(s)	70, 156, 790
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	636
CaiI	CAGNNNCTG	1 cut(s)	808
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	2 cut(s)	19, 86
CviAII	CATG	5 cut(s)	80, 92, 362, 564, 861
DdeI	CTNAG	5 cut(s)	10, 231, 733, 774, 831
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	5 cut(s)	83, 95, 365, 567, 864
FaiI	YATR	6 cut(s)	81, 93, 363, 438, 565, 862
FatI	CATG	5 cut(s)	79, 91, 361, 563, 860
Fnu4HI	GCNGC	5 cut(s)	186, 207, 210, 677, 803
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	186, 207, 210, 677, 803
FspBI	CTAG	3 cut(s)	104, 201, 492
GlaI	GCGC	2 cut(s)	18, 85
GluI	GCNGC	5 cut(s)	186, 207, 210, 677, 803
HapII	CCGG	1 cut(s)	616
HhaI	GCGC	2 cut(s)	19, 86
Hin1II	CATG	5 cut(s)	83, 95, 365, 567, 864
Hin6I	GCGC	2 cut(s)	17, 84
HinP1I	GCGC	2 cut(s)	17, 84
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	632
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	5 cut(s)	382, 697, 709, 790, 827
Hpy166II	GTNNAC	4 cut(s)	373, 561, 797, 913
Hpy188I	TCNGA	3 cut(s)	13, 529, 649
Hpy188III	TCNNGA	6 cut(s)	104, 147, 272, 280, 362, 391
Hpy8I	GTNNAC	4 cut(s)	373, 561, 797, 913
HpyAV	CCTTC	2 cut(s)	181, 534
HpyCH4III	ACNGT	3 cut(s)	160, 409, 794
HpyCH4IV	ACGT	1 cut(s)	915
HpyCH4V	TGCA	7 cut(s)	212, 425, 498, 574, 802, 905, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 422
HpyF3I	CTNAG	5 cut(s)	10, 231, 733, 774, 831
HpySE526I	ACGT	1 cut(s)	915
Hsp92II	CATG	5 cut(s)	83, 95, 365, 567, 864
HspAI	GCGC	2 cut(s)	17, 84
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	173, 660
Lsp1109I	GCAGC	5 cut(s)	172, 193, 196, 688, 814
LweI	GCATC	2 cut(s)	4, 892
MaeI	CTAG	3 cut(s)	104, 201, 492
MaeII	ACGT	1 cut(s)	915
MaeIII	GTNAC	3 cut(s)	403, 459, 591
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	162, 602, 758, 781, 793
MhlI	GDGCHC	3 cut(s)	70, 170, 915
MluCI	AATT	3 cut(s)	107, 468, 881
MnlI	CCTC	8 cut(s)	55, 146, 322, 358, 659, 769, 798, 811
MseI	TTAA	2 cut(s)	473, 519
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	206, 422
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	83, 95, 365, 567, 864
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	567
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	1 cut(s)	55
PflFI	GACNNNGTC	2 cut(s)	290, 409
PkrI	GCNGC	5 cut(s)	187, 208, 211, 678, 804
Psp124BI	GAGCTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	853
PstI	CTGCAG	3 cut(s)	214, 576, 804
PstNI	CAGNNNCTG	1 cut(s)	808
PsyI	GACNNNGTC	2 cut(s)	290, 409
PvuII	CAGCTG	1 cut(s)	899
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	473, 519
SatI	GCNGC	5 cut(s)	186, 207, 210, 677, 803
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	855
SduI	GDGCHC	3 cut(s)	70, 170, 915
SfaNI	GCATC	2 cut(s)	4, 892
SfcI	CTRYAG	3 cut(s)	210, 572, 800
Sse9I	AATT	3 cut(s)	107, 468, 881
SspI	AATATT	3 cut(s)	478, 585, 721
SspMI	CTAG	3 cut(s)	104, 201, 492
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	160, 409, 794
TaiI	ACGT	1 cut(s)	918
TaqI	TCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	107, 468, 881
Tru1I	TTAA	2 cut(s)	473, 519
Tru9I	TTAA	2 cut(s)	473, 519
TscAI	CASTG	3 cut(s)	70, 163, 797
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	5 cut(s)	185, 206, 209, 676, 802
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	48, 68, 80, 849
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	3 cut(s)	70, 163, 797
Tth111I	GACNNNGTC	2 cut(s)	290, 409
VneI	GTGCAC	1 cut(s)	911
XapI	RAATTY	1 cut(s)	881
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	3 cut(s)	104, 201, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.