Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

48257278 .. 48269560

Gene Structure 12283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTCTCTCAGATGCGCCCCAGAAATGGTTTCAGCTCAAATCCTCAAATAAGCATTCATTCAGTGCTCTGTCTTTTCATGGCGCAGTTCATGGTTGTATTCTAGAATTACTGAACAAGAAACTTGAAAACCAGAAATGGGTATCACGAAGAGGCACTGTGTTGAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGCTAGTGCTGCTGCAGTATCAAATGGGATAGCTGAGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCAGACTTCGAGACAGACATCGTCTCGTGTGGATTTGTGAAAGACCTACAAATCAATGAGGCTTTGGGAGAGTTTGAGCAAAAGGTAAATCATGAGGTGGTGAACGAGCTTCCTTGGGTCAAGAATGTCAATGTGACTGTGTCAGCACAACCTGCAAAACCCCTTTATACTGGGCAACTTCCAGCAGGGTTACGGACAATTTTAAATATTGTGGCAGTTTCTAGTTGCAAGGTAGACTTTCCATATTTGTCTGGTGCTTTCTTAGCTGGGGAGAGCTGGATTACCTTGTTGTTGACATGCCCCCTGCAGTTGGTAATATTTAGGTTACTTTGTGCCAGTCATCTTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACGGGAGGTGCTTGGCAGCAAAGGGTGAAGTGTCTGGTGAATGTGAAAGATTTTCCAAATATTATCATTCGCTTAGCCCAGTTTGAAGAATATCGTGGTGGTATTAGGAAGACTGAGGTGAAGACCCCTCACTGTTTACTGCAGCTTCTGTTGGGTGAGGTTTTTGGTGCTGAGTTTGTTTTGGATAGCTTCCCAGGTTCATGTGCTTACTTCCATTTTGAATTTTGGGATTGGTCAGCTGATGCACAAGTGCACGTTAGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

309

Amino Acids

34.18

Weight (kDa)

6.71

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	884
AfiI	CCNNNNNNNGG	3 cut(s)	27, 139, 580
AgsI	TTSAA	3 cut(s)	128, 749, 884
AjnI	CCWGG	1 cut(s)	856
Alw21I	GWGCWC	3 cut(s)	70, 170, 918
Alw26I	GTCTC	4 cut(s)	11, 261, 275, 298
Alw44I	GTGCAC	1 cut(s)	914
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	811
ApaLI	GTGCAC	1 cut(s)	914
ApeKI	GCWGC	5 cut(s)	185, 206, 209, 679, 805
ApoI	RAATTY	1 cut(s)	884
AspLEI	GCGC	2 cut(s)	19, 86
AsuHPI	GGTGA	5 cut(s)	382, 700, 712, 793, 830
BaeGI	GKGCMC	1 cut(s)	918
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	779, 791
Bbv12I	GWGCWC	3 cut(s)	70, 170, 918
BbvI	GCAGC	5 cut(s)	172, 193, 196, 691, 817
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	909
BciT130I	CCWGG	1 cut(s)	858
BcoDI	GTCTC	4 cut(s)	11, 261, 275, 298
BfaI	CTAG	3 cut(s)	104, 201, 492
BfmI	CTRYAG	3 cut(s)	210, 575, 803
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	5 cut(s)	186, 207, 210, 680, 806
BlpI	GCTNAGC	1 cut(s)	736
BlsI	GCNGC	5 cut(s)	187, 208, 211, 681, 807
Bme1390I	CCNGG	1 cut(s)	858
BmrFI	CCNGG	1 cut(s)	858
BmrI	ACTGGG	2 cut(s)	450, 736
BmsI	GCATC	2 cut(s)	4, 895
BmuI	ACTGGG	2 cut(s)	450, 736
BpiI	GAAGAC	2 cut(s)	779, 791
Bpu1102I	GCTNAGC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	383, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 139, 580
Bse1I	ACTGG	3 cut(s)	445, 606, 742
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	383, 856
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	3 cut(s)	27, 139, 580
BseMII	CTCAG	4 cut(s)	24, 222, 768, 825
BseNI	ACTGG	3 cut(s)	445, 606, 742
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	5 cut(s)	172, 193, 196, 691, 817
BseYI	CCCAGC	1 cut(s)	536
BsiHKAI	GWGCWC	3 cut(s)	70, 170, 918
BsiSI	CCGG	1 cut(s)	619
BslI	CCNNNNNNNGG	3 cut(s)	27, 139, 580
BsmAI	GTCTC	4 cut(s)	11, 261, 275, 298
BsmBI	CGTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	70, 170, 918
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	736
BspCNI	CTCAG	4 cut(s)	23, 223, 769, 826
BspHI	TCATGA	1 cut(s)	361
BspMAI	CTGCAG	3 cut(s)	214, 579, 807
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	445, 606, 742
BssECI	CCNNGG	2 cut(s)	383, 856
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	3 cut(s)	160, 409, 797
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	6 cut(s)	10, 231, 532, 736, 777, 834
BstF5I	GGATG	1 cut(s)	629
BstHHI	GCGC	2 cut(s)	19, 86
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	4 cut(s)	11, 261, 275, 298
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 422, 533
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	3 cut(s)	210, 575, 803
BstSLI	GKGCMC	1 cut(s)	918
BstV1I	GCAGC	5 cut(s)	172, 193, 196, 691, 817
BstV2I	GAAGAC	2 cut(s)	779, 791
BtsCI	GGATG	1 cut(s)	629
BtsIMutI	CAGTG	3 cut(s)	70, 156, 793
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	811
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	2 cut(s)	19, 86
CviAII	CATG	5 cut(s)	80, 92, 362, 567, 864
DdeI	CTNAG	6 cut(s)	10, 231, 532, 736, 777, 834
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	5 cut(s)	83, 95, 365, 570, 867
FaiI	YATR	7 cut(s)	81, 93, 363, 438, 514, 568, 865
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	5 cut(s)	79, 91, 361, 566, 863
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	186, 207, 210, 680, 806
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	186, 207, 210, 680, 806
FspBI	CTAG	3 cut(s)	104, 201, 492
GlaI	GCGC	2 cut(s)	18, 85
GluI	GCNGC	5 cut(s)	186, 207, 210, 680, 806
GsaI	CCCAGC	1 cut(s)	540
HapII	CCGG	1 cut(s)	619
HhaI	GCGC	2 cut(s)	19, 86
Hin1II	CATG	5 cut(s)	83, 95, 365, 570, 867
Hin6I	GCGC	2 cut(s)	17, 84
HinP1I	GCGC	2 cut(s)	17, 84
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	635
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	5 cut(s)	382, 700, 712, 793, 830
Hpy166II	GTNNAC	5 cut(s)	373, 505, 564, 800, 916
Hpy188I	TCNGA	2 cut(s)	13, 652
Hpy188III	TCNNGA	6 cut(s)	104, 147, 272, 280, 362, 391
Hpy8I	GTNNAC	5 cut(s)	373, 505, 564, 800, 916
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	160, 409, 797
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	7 cut(s)	212, 425, 498, 577, 805, 908, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 422, 533
HpyF3I	CTNAG	6 cut(s)	10, 231, 532, 736, 777, 834
HpySE526I	ACGT	1 cut(s)	918
Hsp92II	CATG	5 cut(s)	83, 95, 365, 570, 867
HspAI	GCGC	2 cut(s)	17, 84
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	173, 663
Lsp1109I	GCAGC	5 cut(s)	172, 193, 196, 691, 817
LweI	GCATC	2 cut(s)	4, 895
MaeI	CTAG	3 cut(s)	104, 201, 492
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	3 cut(s)	403, 459, 594
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	162, 605, 761, 784, 796
MhlI	GDGCHC	3 cut(s)	70, 170, 918
MluCI	AATT	3 cut(s)	107, 468, 884
MnlI	CCTC	8 cut(s)	55, 146, 322, 358, 662, 772, 801, 814
MseI	TTAA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	1 cut(s)	858
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	206, 422, 533
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	83, 95, 365, 570, 867
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	570
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	1 cut(s)	55
PflFI	GACNNNGTC	2 cut(s)	290, 409
PkrI	GCNGC	5 cut(s)	187, 208, 211, 681, 807
Psp124BI	GAGCTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	856
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	856
PstI	CTGCAG	3 cut(s)	214, 579, 807
PstNI	CAGNNNCTG	1 cut(s)	811
PsyI	GACNNNGTC	2 cut(s)	290, 409
PvuII	CAGCTG	1 cut(s)	902
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	5 cut(s)	186, 207, 210, 680, 806
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	3 cut(s)	70, 170, 918
SfaNI	GCATC	2 cut(s)	4, 895
SfcI	CTRYAG	3 cut(s)	210, 575, 803
Sse9I	AATT	3 cut(s)	107, 468, 884
SspI	AATATT	3 cut(s)	478, 588, 724
SspMI	CTAG	3 cut(s)	104, 201, 492
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	160, 409, 797
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	107, 468, 884
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	3 cut(s)	70, 163, 800
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	5 cut(s)	185, 206, 209, 679, 805
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	48, 68, 80, 852
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	3 cut(s)	70, 163, 800
Tth111I	GACNNNGTC	2 cut(s)	290, 409
VneI	GTGCAC	1 cut(s)	914
XapI	RAATTY	1 cut(s)	884
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	3 cut(s)	104, 201, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.