Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000780.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

86011 .. 90084

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000780.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgcgtatcttacctagttggcagtcccttctaggtaatagtctggttggcaatcccttccagactacagcccggttggcagtctcatccgatgcgtcatctggttggcagtcctttccaggtgacatgagaaacccagaggagatcccatggggtcattttggcgtcgatattgttgaggagtctactggagtattcactgacaaggacaaagccgaggcgcacttgaaggtcagcccaaacaatgtagatgcatcacaaatccaagagatggattcaagggaaaagcgacttaatgagcttggttacaagcaagaactcagaagagagatgcaaatcacggcgtacctgtccaaaatccagagggtctgccatatccagccgttcgggtgcacgattgtggtggaagagtccaccttcggggtcattgcctacagcgagaacgcccgggacttgctcgacctgatgccccagtcggttccggtgctcgagaggcgggagatcctcacaatctggactgacgtcaggacgctcttcatgccttctagctcaacttttgataagagcttaaaatgcaacgttaataatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

197

Amino Acids

22.25

Weight (kDa)

5.14

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	496
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	2 cut(s)	139, 496
AcyI	GRCGYC	2 cut(s)	165, 522
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	271, 420
AgsI	TTSAA	2 cut(s)	229, 279
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	301, 549, 567
AluI	AGCT	3 cut(s)	301, 549, 567
Alw21I	GWGCWC	2 cut(s)	395, 489
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	139, 496
Ama87I	CYCGRG	2 cut(s)	447, 488
ApaLI	GTGCAC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	223
AsuC2I	CCSGG	3 cut(s)	73, 448, 449
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	2 cut(s)	447, 488
BaeGI	GKGCMC	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	395, 489
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	357, 367
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	3 cut(s)	73, 448, 449
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	15, 32, 546
BfmI	CTRYAG	2 cut(s)	66, 433
BglI	GCCNNNNNGGC	1 cut(s)	77
Bme1390I	CCNGG	4 cut(s)	73, 120, 448, 449
BmeT110I	CYCGRG	2 cut(s)	447, 488
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	4 cut(s)	73, 120, 448, 449
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	5 cut(s)	82, 241, 263, 321, 456
BmuI	ACTGGG	1 cut(s)	466
BoxI	GACNNNNGTC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	3 cut(s)	73, 448, 449
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	165, 522
BsaJI	CCNNGG	3 cut(s)	149, 216, 447
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 420
Bse1I	ACTGG	2 cut(s)	193, 472
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	149, 216, 447
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	271, 420
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	193, 472
BseRI	GAGGAG	2 cut(s)	155, 194
BseSI	GKGCMC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	395, 489
BsiHKCI	CYCGRG	2 cut(s)	447, 488
BsiSI	CCGG	3 cut(s)	73, 448, 482
BslFI	GGGAC	2 cut(s)	10, 464
BslI	CCNNNNNNNGG	2 cut(s)	271, 420
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	10, 464
BsoBI	CYCGRG	2 cut(s)	447, 488
Bsp1286I	GDGCHC	2 cut(s)	395, 489
Bsp143I	GATC	2 cut(s)	144, 501
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	139, 496
BspQI	GCTCTTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	193, 472
BssECI	CCNNGG	3 cut(s)	149, 216, 447
BssMI	GATC	2 cut(s)	144, 501
BssNI	GRCGYC	2 cut(s)	165, 522
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	120
Bst6I	CTCTTC	3 cut(s)	319, 402, 539
BstACI	GRCGYC	2 cut(s)	165, 522
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	147, 504
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	144, 501
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 493, 538, 573
BstNI	CCWGG	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	4 cut(s)	71, 118, 446, 447
BstSFI	CTRYAG	2 cut(s)	66, 433
BstSLI	GKGCMC	1 cut(s)	395
BstX2I	RGATCY	2 cut(s)	144, 501
BstYI	RGATCY	2 cut(s)	144, 501
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	223
Cfr9I	CCCGGG	1 cut(s)	447
CseI	GACGC	3 cut(s)	84, 154, 538
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	127, 150, 538
CviJI	RGCY	7 cut(s)	71, 215, 237, 301, 382, 549, 567
CviKI_1	RGCY	7 cut(s)	71, 215, 237, 301, 382, 549, 567
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	146, 503
DpnII	GATC	2 cut(s)	144, 501
Eam1104I	CTCTTC	3 cut(s)	319, 402, 539
EarI	CTCTTC	3 cut(s)	319, 402, 539
Eco130I	CCWWGG	1 cut(s)	149
Eco88I	CYCGRG	2 cut(s)	447, 488
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	130, 153, 541
FaiI	YATR	4 cut(s)	128, 151, 375, 539
FaqI	GGGAC	2 cut(s)	10, 464
FatI	CATG	3 cut(s)	126, 149, 537
FauI	CCCGC	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	185
FokI	GGATG	1 cut(s)	73
FspBI	CTAG	3 cut(s)	15, 32, 546
GlaI	GCGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	3 cut(s)	73, 448, 482
HgaI	GACGC	3 cut(s)	84, 154, 538
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	2 cut(s)	165, 522
Hin1II	CATG	3 cut(s)	130, 153, 541
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	3 cut(s)	182, 275, 410
HpaII	CCGG	3 cut(s)	73, 448, 482
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	3 cut(s)	186, 393, 414
Hpy188I	TCNGA	2 cut(s)	91, 323
Hpy188III	TCNNGA	5 cut(s)	61, 361, 490, 514, 526
Hpy8I	GTNNAC	3 cut(s)	186, 393, 414
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	5 cut(s)	38, 67, 223, 427, 552
HpyCH4IV	ACGT	2 cut(s)	522, 579
HpyCH4V	TGCA	4 cut(s)	254, 334, 393, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 493, 538, 573
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	522, 579
Hsp92I	GRCGYC	2 cut(s)	165, 522
Hsp92II	CATG	3 cut(s)	130, 153, 541
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	144, 501
LguI	GCTCTTC	1 cut(s)	539
LweI	GCATC	5 cut(s)	82, 241, 263, 321, 456
MaeI	CTAG	3 cut(s)	15, 32, 546
MaeII	ACGT	2 cut(s)	522, 579
MaeIII	GTNAC	2 cut(s)	122, 305
MalI	GATC	2 cut(s)	146, 503
MboI	GATC	2 cut(s)	144, 501
MboII	GAAGA	3 cut(s)	336, 419, 526
MflI	RGATCY	2 cut(s)	144, 501
MhlI	GDGCHC	2 cut(s)	395, 489
MlyI	GAGTC	2 cut(s)	191, 419
MnlI	CCTC	6 cut(s)	133, 172, 211, 357, 486, 515
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	4 cut(s)	294, 569, 582, 592
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	3 cut(s)	73, 448, 482
MspR9I	CCNGG	4 cut(s)	73, 120, 448, 449
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	77, 493, 538, 573
NciI	CCSGG	3 cut(s)	73, 448, 449
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	144, 501
NlaIII	CATG	3 cut(s)	130, 153, 541
NlaIV	GGNNCC	1 cut(s)	480
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	256
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	271
PleI	GAGTC	2 cut(s)	190, 418
PpsI	GAGTC	2 cut(s)	190, 418
PshAI	GACNNNNGTC	1 cut(s)	521
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	144, 501
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	294, 569, 582, 592
Sau3AI	GATC	2 cut(s)	144, 501
SchI	GAGTC	2 cut(s)	191, 419
ScrFI	CCNGG	4 cut(s)	73, 120, 448, 449
SduI	GDGCHC	2 cut(s)	395, 489
SfaNI	GCATC	5 cut(s)	82, 241, 263, 321, 456
SfcI	CTRYAG	2 cut(s)	66, 433
Sfr274I	CTCGAG	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	3 cut(s)	15, 32, 546
StyD4I	CCNGG	4 cut(s)	71, 118, 446, 447
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	2 cut(s)	525, 582
TaqI	TCGA	3 cut(s)	168, 459, 489
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	4 cut(s)	294, 569, 582, 592
Tru9I	TTAA	4 cut(s)	294, 569, 582, 592
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	526
TspMI	CCCGGG	1 cut(s)	447
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	488
XmaI	CCCGGG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	3 cut(s)	15, 32, 546
ZraI	GACGTC	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.