Rh2AG356700

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001045
Physical Location & Seq
Forward (+)
52593763 .. 52594251
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG356700.1

Sequence Viewer

Length: 246 bp
ATGGCGACAAATATCGACATGATGGACGGGGCTTACTTCGTCGGTAGATCTGAGATCTTGGCTTGGATCAACTCCACTCGATCTCCAACTCCATCTAAACAAAGTCAAAGAGACTTTACCGAAGAACTTGAATCCCTTTTCGATTACAGCCGCACACAATCTCTCAATGTCATCTCCCTCGACGACGACGATGGTGGTGAGCTCTTTTCGATAACTGGAATCTTTATGAATTCAATCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

81

Amino Acids

9.12

Weight (kDa)

4.15

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 229
AgsI TTSAA 2 cut(s) 131, 234
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 3 cut(s) 16, 100, 185
BcoDI GTCTC 1 cut(s) 105
BglII AGATCT 2 cut(s) 47, 54
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bse1I ACTGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 47, 54, 66, 80
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 220
BssMI GATC 4 cut(s) 47, 54, 66, 80
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 4 cut(s) 50, 57, 69, 83
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 47, 54, 66, 80
BstX2I RGATCY 2 cut(s) 47, 54
BstYI RGATCY 2 cut(s) 47, 54
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 32, 62, 150, 202
CviKI_1 RGCY 4 cut(s) 32, 62, 150, 202
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 49, 56, 68, 82
DpnII GATC 4 cut(s) 47, 54, 66, 80
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 227
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 131, 219
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 52
Hpy99I CGWCG 4 cut(s) 44, 185, 188, 191
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 4 cut(s) 47, 54, 66, 80
LpnPI CCDG 1 cut(s) 201
MalI GATC 4 cut(s) 49, 56, 68, 82
MboI GATC 4 cut(s) 47, 54, 66, 80
MboII GAAGA 1 cut(s) 134
MflI RGATCY 2 cut(s) 47, 54
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 1 cut(s) 188
NdeII GATC 4 cut(s) 47, 54, 66, 80
NlaIII CATG 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 131, 219
PkrI GCNGC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 204
PsuI RGATCY 2 cut(s) 47, 54
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 4 cut(s) 47, 54, 66, 80
SduI GDGCHC 1 cut(s) 204
SetI ASST 1 cut(s) 204
SgeI CNNG 8 cut(s) 31, 40, 70, 75, 90, 140, 191, 228
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 151
SstI GAGCTC 1 cut(s) 204
TaqI TCGA 5 cut(s) 15, 79, 141, 180, 209
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 131, 219
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.