Rroxscaffold_1G00047770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001045
Physical Location & Seq
Forward (+)
67589883 .. 67593774
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047770.1

Sequence Viewer

Length: 195 bp
ATGGAAGACGATGTTCCCCCTCACCATCTCCGGTACCTGCCTCTCAAGGCCATCACCGCCAATAATCCAAGTGCCGTCATCTTCTTCATCGATCTGAGGGCTTGTCCGATAACCGCTACTATGGCGGCAACGAGGTACATCACCATGTTCCAGCTCCATGACCGAATCATGGGCTCCCTTCCGTTGGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.21

Weight (kDa)

6.81

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 3 cut(s) 57, 114, 125
AfaI GTAC 2 cut(s) 35, 137
AfiI CCNNNNNNNGG 2 cut(s) 169, 184
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AoxI GGCC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 14, 46, 133
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 33, 59
BceAI ACGGC 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 45
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 35, 175
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 184
BseCI ATCGAT 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 169, 184
BseMII CTCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 169, 184
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 3 cut(s) 57, 114, 125
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 35, 175
BspMI ACCTGC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 33
BssMI GATC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 56, 122
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 90
BveI ACCTGC 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 90
Csp6I GTAC 2 cut(s) 34, 136
CviAII CATG 3 cut(s) 145, 158, 169
CviJI RGCY 4 cut(s) 50, 101, 154, 174
CviKI_1 RGCY 4 cut(s) 50, 101, 154, 174
CviQI GTAC 2 cut(s) 34, 136
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 176
FaeI CATG 3 cut(s) 148, 161, 172
FaiI YATR 4 cut(s) 122, 146, 159, 170
FatI CATG 3 cut(s) 144, 157, 168
Fnu4HI GCNGC 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 31
Hin1II CATG 3 cut(s) 148, 161, 172
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 31
HphI GGTGA 3 cut(s) 14, 46, 133
Hpy188I TCNGA 2 cut(s) 96, 108
HpyAV CCTTC 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 122
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 3 cut(s) 148, 161, 172
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 159, 179
LpnPI CCDG 3 cut(s) 44, 50, 164
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 3 cut(s) 17, 73, 76
MhlI GDGCHC 1 cut(s) 176
MnlI CCTC 4 cut(s) 30, 51, 90, 126
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 56, 122
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 148, 161, 172
NlaIV GGNNCC 2 cut(s) 35, 175
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 35, 175
RsaI GTAC 2 cut(s) 35, 137
RsaNI GTAC 2 cut(s) 34, 136
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 176
SetI ASST 3 cut(s) 39, 137, 156
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 3 cut(s) 57, 114, 125
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 177
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 165
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.