Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

14132347 .. 14152798

Gene Structure 20452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAAGCAACACATCCCGGTTGCACAATACCTTCTCCCGGTGACCAACACCTCCTCAAACTCGGTACTGTTACCTCCTCTCAGCAGCTCATCCCGGCATCATATTTGCCGCACTCGCCAACCTCACCAAGTCCCGTTCTCAGTGACTCATTCCCACCAGTCTCGGTGACACACACCTCTCGGTCCCGACAGCAACAACACTTCTTCTACTTCCTCTCGGCGACCAACCCGAACTTGTGGGTGATAGGGAAAAACTCCACCACAGAACTAAGATTGAGGGAAGATAGCGCACAAACTTCATCTATAGAGAAATTAATAACCAGTCTTGAGCCCATGGGAGTGAGAGTTTATGAAGTTGATGAACCCAATGTGAGTTCTGCAATCAAAGATATTTCATGGGATAATCTTGCTGGATATGATCTACAAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

144

Amino Acids

15.88

Weight (kDa)

6.17

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	85
AseI	ATTAAT	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	3 cut(s)	18, 39, 95
AsuHPI	GGTGA	4 cut(s)	53, 117, 178, 253
AvaII	GGWCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	97
BcnI	CCSGG	3 cut(s)	18, 39, 95
BcoDI	GTCTC	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	86, 110
BlsI	GCNGC	2 cut(s)	87, 111
Bme1390I	CCNGG	3 cut(s)	18, 39, 95
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	3 cut(s)	18, 39, 95
BmsI	GCATC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	18, 39, 95
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	158, 321
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	13, 90
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	95, 154
BseNI	ACTGG	2 cut(s)	158, 321
BseRI	GAGGAG	2 cut(s)	44, 67
BseXI	GCAGC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	18, 39, 95
BslFI	GGGAC	2 cut(s)	117, 169
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	117, 169
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	418
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	94, 153
BspLI	GGNNCC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	158, 321
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	81, 140, 269
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	13, 90
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	16, 37, 93
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	13, 90
BtsIMutI	CAGTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	2 cut(s)	334, 396
CviJI	RGCY	2 cut(s)	88, 331
CviKI_1	RGCY	2 cut(s)	88, 331
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	3 cut(s)	81, 140, 269
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	337, 399
FaiI	YATR	6 cut(s)	103, 305, 335, 351, 397, 417
FaqI	GGGAC	2 cut(s)	117, 169
FatI	CATG	2 cut(s)	333, 395
Fnu4HI	GCNGC	2 cut(s)	86, 110
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	86, 110
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	2 cut(s)	86, 110
HapII	CCGG	3 cut(s)	18, 39, 95
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	337, 399
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	3 cut(s)	18, 39, 95
HphI	GGTGA	4 cut(s)	53, 117, 178, 253
Hpy188III	TCNNGA	2 cut(s)	186, 326
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	24, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	81, 140, 269
Hsp92II	CATG	2 cut(s)	337, 399
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	418
LpnPI	CCDG	6 cut(s)	31, 52, 108, 171, 334, 396
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	4 cut(s)	41, 70, 143, 166
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	2 cut(s)	196, 293
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	8 cut(s)	62, 65, 85, 88, 133, 187, 224, 270
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	3 cut(s)	18, 39, 95
MspR9I	CCNGG	3 cut(s)	18, 39, 95
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	3 cut(s)	18, 39, 95
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	337, 399
NlaIV	GGNNCC	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	3 cut(s)	41, 143, 166
PkrI	GCNGC	2 cut(s)	87, 111
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	86, 110
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	18, 39, 95
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	6 cut(s)	34, 54, 77, 90, 125, 179
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	16, 37, 93
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	70
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	3 cut(s)	41, 143, 166
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	3 cut(s)	41, 143, 166
TspDTI	ATGAA	5 cut(s)	17, 288, 366, 375, 384
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.