Rroxscaffold_2G00143760

Protein mrp homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
81704721 .. 81715468
10748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143760.1

Sequence Viewer

Length: 972 bp
ATGGTCCTGGCCGGATGCGAAGAGAGTGGATTTGGTATTGGCGGCGGGCGCTGTCTCTGCCGGATTAGCCTTTGCTCCGGTTGTTACATTCTTTCCGGGATTAAGGTGGTTGCGTCGCGGCCGGGTCTGCTGGAGGTTTCTGCGCCACTCGTGCCGGAGGAAGGTGGATTTCCCTCCGTTCGGCCCCGACCGCCGAGCGGTTGGTATGTGGTTGTGACTCCGCCTCCTGCTCCGGTATCTGCGGGGGAGGTGAGCCTATCTCCGATAGTTACGGTGGGTTCGGCGGTACTTGCATATGTACGATTGGTCCGGTACCAATCCGCGGTTGTTGGGTTGACCGTGTCTAGTGCTCCGCGATCGCTCTCTTCGCGGCGGGTTGGCGTTTGCTTCCGGCGCCCTGCCCGGGGAATCGAGCTCAATTCCGAGAGCTATGTTTTCTTCCTCTCCCGGGTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACCGATTGATGGTTGTGGCAGCAGCTGGCATGGAGAAGTGGCAAGGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGCAAAAGGCAAATGAGGTGGTGATCGAGCATCCTTGGGTCAAGAATGTCATTGTGACTATGTCAGCACAACCTGCACAACCCTTTTATGCCGGGCAACTTCCTCAAGAGAGTTACGAGACAATTTCAAATATTGTGGCAGTTTCTAGTTGCAAGGATTATGTGCCTACGGTGTTTGACAACATCGGTGCTAATTTGGTGGCGGATGCACGGTTAACCTTGGATTGTGGGACACTTGCAGGTTTCATAGCTATGTATGCTACACTTGCCGGTCGCGATGTGGACTATTGTTTGATTCCGATTCCCCTTTCTTTCTTAAAAGGACGAGGTAGACTTTTTGAGTTCATTGAAAAGCGACTCGGAAAATGGACATATGGTTATTGTGATTGCTGA

Protein Analysis

323

Amino Acids

34.61

Weight (kDa)

8.42

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 661, 809
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 3 cut(s) 312, 393, 502
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 910
AccII CGCG 5 cut(s) 118, 323, 355, 370, 855
AcoI YGGCCR 2 cut(s) 9, 119
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 3 cut(s) 288, 300, 314
AfiI CCNNNNNNNGG 9 cut(s) 161, 180, 197, 322, 403, 404, 448, 460, 512
AgsI TTSAA 2 cut(s) 708, 929
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 4 cut(s) 415, 429, 528, 830
AluI AGCT 4 cut(s) 415, 429, 528, 830
Alw21I GWGCWC 2 cut(s) 352, 417
Alw26I GTCTC 2 cut(s) 59, 692
AlwNI CAGNNNCTG 1 cut(s) 528
Ama87I CYCGRG 2 cut(s) 402, 447
AoxI GGCC 3 cut(s) 9, 119, 182
ApeKI GCWGC 2 cut(s) 522, 525
AsiSI GCGATCGC 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 3 cut(s) 51, 145, 396
AspS9I GGNCC 4 cut(s) 4, 183, 307, 451
AsuC2I CCSGG 7 cut(s) 97, 123, 403, 404, 448, 449, 673
AsuHPI GGTGA 2 cut(s) 262, 613
AvaI CYCGRG 2 cut(s) 402, 447
AvaII GGWCC 3 cut(s) 4, 307, 451
BaeGI GKGCMC 1 cut(s) 505
BanI GGYRCC 3 cut(s) 312, 393, 502
BanII GRGCYC 1 cut(s) 417
BauI CACGAG 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 352, 417
BbvI GCAGC 2 cut(s) 534, 537
BccI CCATC 2 cut(s) 454, 506
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 7 cut(s) 97, 123, 403, 404, 448, 449, 673
BcoDI GTCTC 2 cut(s) 59, 692
BfaI CTAG 2 cut(s) 345, 726
BfoI RGCGCY 2 cut(s) 52, 397
BfuAI ACCTGC 2 cut(s) 661, 809
BisI GCNGC 5 cut(s) 43, 119, 371, 523, 526
BlsI GCNGC 5 cut(s) 44, 120, 372, 524, 527
Bme1390I CCNGG 8 cut(s) 8, 97, 123, 403, 404, 448, 449, 673
Bme18I GGWCC 3 cut(s) 4, 307, 451
BmeT110I CYCGRG 2 cut(s) 402, 447
BmgT120I GGNCC 4 cut(s) 4, 183, 307, 451
BmiI GGNNCC 5 cut(s) 185, 314, 395, 452, 504
BmrFI CCNGG 8 cut(s) 8, 97, 123, 403, 404, 448, 449, 673
BmsI GCATC 3 cut(s) 5, 619, 775
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 2 cut(s) 152, 492
BpuEI CTTGAG 1 cut(s) 669
BpuMI CCSGG 7 cut(s) 97, 123, 403, 404, 448, 449, 673
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 6 cut(s) 321, 402, 403, 447, 614, 798
BsaWI WCCGGW 3 cut(s) 77, 232, 309
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 9 cut(s) 161, 180, 197, 322, 403, 404, 448, 460, 512
Bse118I RCCGGY 1 cut(s) 848
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 6 cut(s) 321, 402, 403, 447, 614, 798
BseGI GGATG 3 cut(s) 20, 610, 790
BseLI CCNNNNNNNGG 9 cut(s) 161, 180, 197, 322, 403, 404, 448, 460, 512
BseSI GKGCMC 1 cut(s) 505
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 534, 537
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 5 cut(s) 118, 323, 355, 370, 855
Bsh1285I CGRYCG 4 cut(s) 122, 191, 359, 853
BshFI GGCC 3 cut(s) 11, 121, 184
BshNI GGYRCC 3 cut(s) 312, 393, 502
BsiEI CGRYCG 4 cut(s) 122, 191, 359, 853
BsiHKAI GWGCWC 2 cut(s) 352, 417
BsiHKCI CYCGRG 2 cut(s) 402, 447
BslFI GGGAC 1 cut(s) 823
BslI CCNNNNNNNGG 9 cut(s) 161, 180, 197, 322, 403, 404, 448, 460, 512
BsmAI GTCTC 2 cut(s) 59, 692
BsmFI GGGAC 1 cut(s) 823
BsnI GGCC 3 cut(s) 11, 121, 184
BsoBI CYCGRG 2 cut(s) 402, 447
Bsp1286I GDGCHC 3 cut(s) 352, 417, 505
Bsp143I GATC 2 cut(s) 356, 603
Bsp68I TCGCGA 1 cut(s) 855
BspANI GGCC 3 cut(s) 11, 121, 184
BspFNI CGCG 5 cut(s) 118, 323, 355, 370, 855
BspLI GGNNCC 5 cut(s) 185, 314, 395, 452, 504
BspMI ACCTGC 2 cut(s) 661, 809
BspT107I GGYRCC 3 cut(s) 312, 393, 502
BsrBI CCGCTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 848
BssAI RCCGGY 1 cut(s) 848
BssECI CCNNGG 6 cut(s) 321, 402, 403, 447, 614, 798
BssMI GATC 2 cut(s) 356, 603
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 614, 798
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 4 cut(s) 274, 340, 751, 792
Bst6I CTCTTC 2 cut(s) 15, 370
BstACI GRCGYC 1 cut(s) 394
BstAPI GCANNNNNTGC 2 cut(s) 557, 653
BstC8I GCNNGC 2 cut(s) 47, 530
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 20, 610, 790
BstFNI CGCG 5 cut(s) 118, 323, 355, 370, 855
BstH2I RGCGCY 2 cut(s) 52, 397
BstHHI GCGC 3 cut(s) 51, 145, 396
BstKTI GATC 2 cut(s) 359, 606
BstMAI GTCTC 2 cut(s) 59, 692
BstMBI GATC 2 cut(s) 356, 603
BstMCI CGRYCG 4 cut(s) 122, 191, 359, 853
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 8 cut(s) 6, 95, 121, 401, 402, 446, 447, 671
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 5 cut(s) 118, 323, 355, 370, 855
BstV1I GCAGC 2 cut(s) 534, 537
BstZI CGGCCG 1 cut(s) 119
BsuRI GGCC 3 cut(s) 11, 121, 184
BtgI CCRYGG 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 20, 610, 790
BtuMI TCGCGA 1 cut(s) 855
BveI ACCTGC 2 cut(s) 661, 809
Cac8I GCNNGC 2 cut(s) 47, 530
CaiI CAGNNNCTG 1 cut(s) 528
CfoI GCGC 3 cut(s) 51, 145, 396
Cfr10I RCCGGY 1 cut(s) 848
Cfr13I GGNCC 4 cut(s) 4, 183, 307, 451
Cfr42I CCGCGG 1 cut(s) 324
Cfr9I CCCGGG 2 cut(s) 402, 447
CseI GACGC 1 cut(s) 102
Csp6I GTAC 3 cut(s) 287, 299, 313
CspCI CAANNNNNGTGG 4 cut(s) 579, 614, 696, 731
CviAII CATG 2 cut(s) 455, 533
CviJI RGCY 9 cut(s) 11, 69, 121, 184, 255, 415, 429, 528, 830
CviKI_1 RGCY 9 cut(s) 11, 69, 121, 184, 255, 415, 429, 528, 830
CviQI GTAC 3 cut(s) 287, 299, 313
DdeI CTNAG 1 cut(s) 579
DinI GGCGCC 1 cut(s) 395
DpnI GATC 2 cut(s) 358, 605
DpnII GATC 2 cut(s) 356, 603
EaeI YGGCCR 2 cut(s) 9, 119
EagI CGGCCG 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 15, 370
EarI CTCTTC 2 cut(s) 15, 370
EciI GGCGGA 2 cut(s) 210, 797
Ecl136II GAGCTC 1 cut(s) 415
EclXI CGGCCG 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 614, 798
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 3 cut(s) 4, 307, 451
Eco52I CGGCCG 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 415
Eco88I CYCGRG 2 cut(s) 402, 447
EcoICRI GAGCTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 614, 798
EcoT38I GRGCYC 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 614, 798
FaeI CATG 2 cut(s) 458, 536
FaqI GGGAC 1 cut(s) 823
FatI CATG 2 cut(s) 454, 532
FauI CCCGC 3 cut(s) 38, 235, 366
FauNDI CATATG 3 cut(s) 295, 496, 952
FblI GTMKAC 1 cut(s) 910
Fnu4HI GCNGC 5 cut(s) 43, 119, 371, 523, 526
FokI GGATG 3 cut(s) 27, 597, 797
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 5 cut(s) 43, 119, 371, 523, 526
FspBI CTAG 2 cut(s) 345, 726
GlaI GCGC 3 cut(s) 50, 144, 395
GluI GCNGC 5 cut(s) 43, 119, 371, 523, 526
GsuI CTGGAG 2 cut(s) 152, 492
HaeII RGCGCY 2 cut(s) 52, 397
HaeIII GGCC 3 cut(s) 11, 121, 184
HgaI GACGC 1 cut(s) 102
HhaI GCGC 3 cut(s) 51, 145, 396
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 2 cut(s) 458, 536
Hin6I GCGC 3 cut(s) 49, 143, 394
HinP1I GCGC 3 cut(s) 49, 143, 394
HincII GTYRAC 2 cut(s) 336, 795
HindII GTYRAC 2 cut(s) 336, 795
HinfI GANTC 5 cut(s) 217, 408, 874, 880, 936
HpaI GTTAAC 1 cut(s) 795
HphI GGTGA 2 cut(s) 262, 613
Hpy166II GTNNAC 5 cut(s) 336, 490, 795, 862, 911
Hpy188I TCNGA 4 cut(s) 264, 424, 879, 941
Hpy188III TCNNGA 3 cut(s) 622, 686, 854
Hpy8I GTNNAC 5 cut(s) 336, 490, 795, 862, 911
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 4 cut(s) 274, 340, 751, 792
HpyCH4V TGCA 5 cut(s) 293, 656, 732, 788, 818
HpyF3I CTNAG 1 cut(s) 579
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 2 cut(s) 458, 536
HspAI GCGC 3 cut(s) 49, 143, 394
KasI GGCGCC 1 cut(s) 393
KpnI GGTACC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 795
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 2 cut(s) 356, 603
LmnI GCTCC 3 cut(s) 80, 235, 355
Lsp1109I GCAGC 2 cut(s) 534, 537
LweI GCATC 3 cut(s) 5, 619, 775
MaeI CTAG 2 cut(s) 345, 726
MaeIII GTNAC 5 cut(s) 83, 214, 268, 634, 692
MalI GATC 2 cut(s) 358, 605
MbiI CCGCTC 1 cut(s) 198
MboI GATC 2 cut(s) 356, 603
MboII GAAGA 3 cut(s) 32, 357, 430
MhlI GDGCHC 3 cut(s) 352, 417, 505
MluCI AATT 3 cut(s) 418, 702, 772
Mly113I GGCGCC 1 cut(s) 394
MlyI GAGTC 2 cut(s) 211, 930
MseI TTAA 3 cut(s) 102, 794, 896
MslI CAYNNNNRTG 2 cut(s) 495, 830
MspA1I CMGCKG 2 cut(s) 323, 528
MspR9I CCNGG 8 cut(s) 8, 97, 123, 403, 404, 448, 449, 673
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 5 cut(s) 118, 323, 355, 370, 855
NarI GGCGCC 1 cut(s) 394
NciI CCSGG 7 cut(s) 97, 123, 403, 404, 448, 449, 673
NdeI CATATG 3 cut(s) 295, 496, 952
NdeII GATC 2 cut(s) 356, 603
NlaIII CATG 2 cut(s) 458, 536
NlaIV GGNNCC 5 cut(s) 185, 314, 395, 452, 504
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 214, 634
NruI TCGCGA 1 cut(s) 855
PfeI GAWTC 3 cut(s) 408, 874, 880
PflFI GACNNNGTC 2 cut(s) 340, 640
PflMI CCANNNNNTGG 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 95
PkrI GCNGC 5 cut(s) 44, 120, 372, 524, 527
Ple19I CGATCG 1 cut(s) 359
PleI GAGTC 2 cut(s) 211, 930
PluTI GGCGCC 1 cut(s) 397
PpsI GAGTC 2 cut(s) 211, 930
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 185, 314, 395, 452, 504
PspPI GGNCC 4 cut(s) 4, 183, 307, 451
PstNI CAGNNNCTG 1 cut(s) 528
PsyI GACNNNGTC 2 cut(s) 340, 640
PvuI CGATCG 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 528
RgaI GCGATCGC 1 cut(s) 359
RruI TCGCGA 1 cut(s) 855
RsaI GTAC 3 cut(s) 288, 300, 314
RsaNI GTAC 3 cut(s) 287, 299, 313
RseI CAYNNNNRTG 2 cut(s) 495, 830
SacI GAGCTC 1 cut(s) 417
SacII CCGCGG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 102, 794, 896
SatI GCNGC 5 cut(s) 43, 119, 371, 523, 526
Sau3AI GATC 2 cut(s) 356, 603
Sau96I GGNCC 4 cut(s) 4, 183, 307, 451
SchI GAGTC 2 cut(s) 211, 930
ScrFI CCNGG 8 cut(s) 8, 97, 123, 403, 404, 448, 449, 673
SduI GDGCHC 3 cut(s) 352, 417, 505
SfaAI GCGATCGC 1 cut(s) 359
SfaNI GCATC 3 cut(s) 5, 619, 775
SfoI GGCGCC 1 cut(s) 395
Sfr303I CCGCGG 1 cut(s) 324
SgfI GCGATCGC 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 324
SinI GGWCC 3 cut(s) 4, 307, 451
SmaI CCCGGG 2 cut(s) 404, 449
SmiMI CAYNNNNRTG 2 cut(s) 495, 830
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 3 cut(s) 418, 702, 772
SspDI GGCGCC 1 cut(s) 393
SspI AATATT 1 cut(s) 712
SspMI CTAG 2 cut(s) 345, 726
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 8 cut(s) 6, 95, 121, 401, 402, 446, 447, 671
StyI CCWWGG 2 cut(s) 614, 798
TaaI ACNGT 4 cut(s) 274, 340, 751, 792
TaqI TCGA 2 cut(s) 411, 606
TasI AATT 3 cut(s) 418, 702, 772
TauI GCSGC 3 cut(s) 45, 121, 373
TfiI GAWTC 3 cut(s) 408, 874, 880
Tru1I TTAA 3 cut(s) 102, 794, 896
Tru9I TTAA 3 cut(s) 102, 794, 896
TseFI GTSAC 2 cut(s) 214, 634
TseI GCWGC 2 cut(s) 522, 525
Tsp45I GTSAC 2 cut(s) 214, 634
TspDTI ATGAA 2 cut(s) 814, 913
TspGWI ACGGA 1 cut(s) 166
TspMI CCCGGG 2 cut(s) 402, 447
Tth111I GACNNNGTC 2 cut(s) 340, 640
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 3 cut(s) 4, 307, 451
XmaI CCCGGG 2 cut(s) 402, 447
XmiI GTMKAC 1 cut(s) 910
XspI CTAG 2 cut(s) 345, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.