Rorug05G0042700

CRM domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
3708364 .. 3709753
1390 bp
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UTR
Exon/CDS
Intron
Rorug05G0042700.1

Sequence Viewer

Length: 447 bp
ATGTTCTTACTGAAACCCTGTAGAACACATTATAGCTCACCAATCCTCTCAAACCATCCTCATGCGTTTCAAAAGCTAACAAAAACGCAGACTTCCCATTTTGCACCATTGAAAAAATTGTACCCCCACAAACGAAAGCTTAGCTTCAGAGGATGTAGTAGTAATGGACAAGAAGGAGAAGGCGGCAGAAGCGAGAGGAAGCCATTCTTGACTTTAGAAGAAGCTGGTCTAGTCGAAATCTCAGGCCTCAGCACCCACGAGAGGTTTCTATGTCGCCTAACGATATCGTCATTGAATCTGCTAAGGGTGATATCGGAGCAAGAAGGATGCACAATTGAGGAGCTAAATGCAGGGAGAATATGCGACTGGTTTGTAAAGGACAAGCTCAAAAGAGAGCAGAATTTAGGCTCTGCTGTTCTTCAATGGGATGACTCCCAGCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.87

Weight (kDa)

9.06

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 4 cut(s) 71, 112, 295, 422
AluBI AGCT 7 cut(s) 36, 76, 139, 144, 224, 343, 385
AluI AGCT 7 cut(s) 36, 76, 139, 144, 224, 343, 385
AoxI GGCC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 400
Asp700I GAANNNNTTC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 30, 319
BauI CACGAG 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 63
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 1 cut(s) 184
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 185
BmsI GCATC 1 cut(s) 317
Bpu10I CCTNAGC 2 cut(s) 248, 302
Bpu1102I GCTNAGC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 371
BseGI GGATG 4 cut(s) 55, 158, 332, 433
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 255, 262
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 353
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 246
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 254, 261
BsrI ACTGG 1 cut(s) 371
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
BstDEI CTNAG 4 cut(s) 140, 241, 248, 302
BstF5I GGATG 4 cut(s) 55, 158, 332, 433
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 4 cut(s) 55, 158, 332, 433
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 62
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 4 cut(s) 140, 241, 248, 302
Eco147I AGGCCT 1 cut(s) 246
Eco32I GATATC 2 cut(s) 285, 312
Eco57I CTGAAG 1 cut(s) 130
EcoRV GATATC 2 cut(s) 285, 312
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 33, 63, 271, 361
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 191, 223
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 4 cut(s) 42, 165, 339, 440
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 184
GsaI CCCAGC 1 cut(s) 439
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 295, 431
HphI GGTGA 2 cut(s) 30, 319
Hpy188I TCNGA 2 cut(s) 149, 316
Hpy188III TCNNGA 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 167, 173, 317
HpyCH4V TGCA 3 cut(s) 104, 330, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 4 cut(s) 140, 241, 248, 302
Hsp92II CATG 1 cut(s) 65
LmnI GCTCC 2 cut(s) 316, 340
LpnPI CCDG 5 cut(s) 31, 210, 228, 336, 352
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 230
MboII GAAGA 2 cut(s) 230, 410
MfeI CAATTG 1 cut(s) 333
MluCI AATT 3 cut(s) 116, 333, 400
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 7 cut(s) 56, 69, 143, 189, 255, 257, 331
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 60
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 189
NlaIII CATG 1 cut(s) 65
PceI AGGCCT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 435
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 1 cut(s) 184
SchI GAGTC 1 cut(s) 425
SetI ASST 8 cut(s) 38, 78, 141, 146, 226, 266, 345, 387
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 3 cut(s) 116, 333, 400
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 230
StuI AGGCCT 1 cut(s) 246
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 116, 333, 400
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
XapI RAATTY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.