Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

21625835 .. 21627146

Gene Structure 1312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTGATTTACATCAAGCTGGCTTTCTCCTCAATATACAATGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGTTGTGGCAGAGTTGGGGAAGTGGCAAAGGCATTTGGTGCTTTTGGGATAATGAGGTCTAAGGTAGTTCCATTGACTGCTGTTGTTATTGTTAATACACCTCAAAAGCTACCGTTTATTGATGTCGCAAAAGGAGTTCGCATGTTTTCAAAGTTGAAGGTGCCATGTGTTGCTGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

89

Amino Acids

9.51

Weight (kDa)

9.7

Isoelectric Point (pI)

11.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	16 - 48	1.3e-07	PPR repeat
ParA	PF10609	50 - 88	2.2e-06	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	237, 244
AluBI	AGCT	2 cut(s)	19, 196
AluI	AGCT	2 cut(s)	19, 196
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	247
BccI	CCATC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	2 cut(s)	229, 252
CviJI	RGCY	3 cut(s)	19, 23, 196
CviKI_1	RGCY	3 cut(s)	19, 23, 196
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	147
FaeI	CATG	2 cut(s)	232, 255
FaiI	YATR	5 cut(s)	37, 70, 72, 230, 253
FatI	CATG	2 cut(s)	228, 251
FauNDI	CATATG	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	232, 255
Hpy166II	GTNNAC	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	232, 255
LpnPI	CCDG	2 cut(s)	5, 30
MhlI	GDGCHC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	40, 135, 198
MseI	TTAA	2 cut(s)	180, 268
MslI	CAYNNNNRTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	2 cut(s)	232, 255
NlaIV	GGNNCC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	180, 268
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	21, 146, 153, 190, 198, 249
SgeI	CNNG	5 cut(s)	28, 32, 57, 241, 264
SmiMI	CAYNNNNRTG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	180, 268
Tru9I	TTAA	2 cut(s)	180, 268
TscAI	CASTG	1 cut(s)	84
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.