Rh4DG226600

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001045
Physical Location & Seq
Forward (+)
43119125 .. 43119890
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG226600.1

Sequence Viewer

Length: 252 bp
ATGGCGATGAATATCGGCATGAGGGACGGGGCTTACTTCATCGGTAGATCTGAGATCTTGGCTTGGATCAACTCCACTCCATCTCCAACTCCATCTAAACAAAGTCAAAGAGAGGACGAGGCGTCTGCTCCTCCTCCGACCAAGAAGAGGAAGAAGGCTTCGAATTCAGTAGTTGAAAAGGTTGATGACAGTGTGAAGGTTACAGTTATTGAGGAAGATGACGAGGACTGGTTGCTTCCTATGTCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

4.85

Isoelectric Point (pI)

79.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 176
AhdI GACNNNNNGTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 163
AsuII TTCGAA 1 cut(s) 161
BccI CCATC 2 cut(s) 88, 100
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BglII AGATCT 2 cut(s) 47, 54
BmeRI GACNNNNNGTC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 2 cut(s) 120, 123
BshFI GGCC 1 cut(s) 248
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 3 cut(s) 47, 54, 66
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 161
BsrI ACTGG 1 cut(s) 233
BssMI GATC 3 cut(s) 47, 54, 66
BssNI GRCGYC 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 191, 205
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 3 cut(s) 50, 57, 69
BstMBI GATC 3 cut(s) 47, 54, 66
BstX2I RGATCY 2 cut(s) 47, 54
BstYI RGATCY 2 cut(s) 47, 54
BsuRI GGCC 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 196
CseI GACGC 1 cut(s) 111
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 32, 62, 158, 248
CviKI_1 RGCY 4 cut(s) 32, 62, 158, 248
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 49, 56, 68
DpnII GATC 3 cut(s) 47, 54, 66
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 140
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 163
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 242
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 248
HgaI GACGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 52, 138
HpyAV CCTTC 2 cut(s) 148, 190
HpyCH4III ACNGT 2 cut(s) 191, 205
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 3 cut(s) 47, 54, 66
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 49, 56, 68
MboI GATC 3 cut(s) 47, 54, 66
MboII GAAGA 3 cut(s) 157, 163, 227
MflI RGATCY 2 cut(s) 47, 54
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 2 cut(s) 110, 161
MnlI CCTC 8 cut(s) 15, 106, 112, 141, 141, 144, 205, 217
NdeII GATC 3 cut(s) 47, 54, 66
NlaIII CATG 1 cut(s) 22
NspV TTCGAA 1 cut(s) 161
PsuI RGATCY 2 cut(s) 47, 54
Sau3AI GATC 3 cut(s) 47, 54, 66
SetI ASST 2 cut(s) 183, 201
SfuI TTCGAA 1 cut(s) 161
SgeI CNNG 8 cut(s) 31, 40, 70, 75, 130, 154, 235, 241
Sse9I AATT 1 cut(s) 163
TaaI ACNGT 2 cut(s) 191, 205
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 163
TscAI CASTG 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 23, 28
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.