RLG00000031093

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001045
Physical Location & Seq
Forward (+)
1958254 .. 1961182
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031093

Sequence Viewer

Length: 645 bp
ATGGCAGATTTTACCAAAGAACTCGAACCCCTTTTCGATTATAGTCGCGTACAGTCTCTCAATGTCATCTCCCTTGACGACGAGGACGAGGCGTCTACTTCTCCTCCGACCAAGAAGAGGAAGAAGGCTTCGAATTCAATAGTTGAAAAGGTTGATGACAGTGTGAAGGTTGGTTCTTGCTTAATCCGCCAAGAATTTGGTGCTTCACCTTGCTGGATACGACAGTGTCAAGAATTGAGGTTGGCTACCTGCATTCAGGATAGTGGTGTCAAAGAAATCAAGCCCAAGAGGAGTACAATCATGGAAGTGGGGGCTTCAAGAGGGTGCTTATACTTGCTTACTGGCGAAGATGATGGTAGAGGTTATGATATTTGGGTGATGAAGGAATATGGGGTGCCAGAATCTTGGACGAAAACGGTTAAATTCCCATACAGCCTAGTCTCACCCAATGCTTACAGTAACCTTGTTGCCAACGAAATCTGTCATCTCAATATCAAAATTTTACGCACGTTAAGAAAAGAAGTGAAGGATATCGATGATGACGAAAGGATGAATAAGAGCTGGGATGGAAACAAAGCGAAGAAGGACAAGAATTTGGCAAACAGAAGAACAAGGATCATAAAGGAGCTGCCTCAAGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

215

Amino Acids

24.32

Weight (kDa)

8.44

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 95
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 5 cut(s) 133, 194, 422, 498, 592
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 51, 295
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 138, 146, 318
AhdI GACNNNNNGTC 1 cut(s) 91
AluBI AGCT 2 cut(s) 561, 628
AluI AGCT 2 cut(s) 561, 628
Alw26I GTCTC 2 cut(s) 60, 445
AlwI GGATC 1 cut(s) 623
ApeKI GCWGC 1 cut(s) 628
ApoI RAATTY 5 cut(s) 133, 194, 422, 498, 592
AspS9I GGNCC 1 cut(s) 639
AsuHPI GGTGA 3 cut(s) 198, 388, 435
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 639
BaeI ACNNNNGTAYC 2 cut(s) 209, 242
BanI GGYRCC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 615
BccI CCATC 2 cut(s) 347, 560
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 60, 445
BfaI CTAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 257
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 1 cut(s) 629
BlsI GCNGC 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 639
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 639
BmiI GGNNCC 2 cut(s) 396, 640
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 618
Bsa29I ATCGAT 1 cut(s) 534
BsaHI GRCGYC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 534
BseGI GGATG 2 cut(s) 555, 571
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 93, 304
BseXI GCAGC 1 cut(s) 615
BseYI CCCAGC 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 534
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 60, 445
BsmI GAATGC 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 1 cut(s) 615
BspACI CCGC 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 534
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 396, 640
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 1 cut(s) 346
BssMI GATC 1 cut(s) 615
BssNI GRCGYC 1 cut(s) 92
Bst4CI ACNGT 5 cut(s) 54, 161, 225, 418, 458
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 131
BstF5I GGATG 2 cut(s) 555, 571
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 1 cut(s) 618
BstMAI GTCTC 2 cut(s) 60, 445
BstMBI GATC 1 cut(s) 615
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 615
BstXI CCANNNNNNTGG 2 cut(s) 197, 405
Bsu15I ATCGAT 1 cut(s) 534
BsuI GTATCC 1 cut(s) 210
BsuTUI ATCGAT 1 cut(s) 534
BtsCI GGATG 2 cut(s) 555, 571
BtsIMutI CAGTG 2 cut(s) 166, 230
BveI ACCTGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 639
ClaI ATCGAT 1 cut(s) 534
CseI GACGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 50, 294
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 128, 245, 283, 314, 435, 561, 628
CviKI_1 RGCY 7 cut(s) 128, 245, 283, 314, 435, 561, 628
CviQI GTAC 2 cut(s) 50, 294
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 176
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 639
EcoO109I RGGNCCY 1 cut(s) 639
EcoRI GAATTC 1 cut(s) 133
EcoRV GATATC 1 cut(s) 532
FaeI CATG 1 cut(s) 304
FaiI YATR 7 cut(s) 42, 302, 331, 366, 390, 430, 620
FatI CATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 629
FokI GGATG 2 cut(s) 562, 578
Fsp4HI GCNGC 1 cut(s) 629
FspBI CTAG 1 cut(s) 437
GluI GCNGC 1 cut(s) 629
GsaI CCCAGC 1 cut(s) 565
HgaI GACGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 1 cut(s) 304
HinfI GANTC 1 cut(s) 401
HphI GGTGA 3 cut(s) 198, 388, 435
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 230, 257, 318
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 5 cut(s) 118, 160, 376, 520, 577
HpyCH4III ACNGT 5 cut(s) 54, 161, 225, 418, 458
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 509
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 615
LmnI GCTCC 1 cut(s) 625
LpnPI CCDG 6 cut(s) 199, 242, 262, 327, 411, 547
Lsp1109I GCAGC 1 cut(s) 615
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 5 cut(s) 127, 133, 359, 592, 618
MluCI AATT 6 cut(s) 133, 194, 233, 422, 498, 592
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 9 cut(s) 76, 82, 111, 114, 231, 282, 314, 353, 642
MseI TTAA 3 cut(s) 182, 420, 512
MslI CAYNNNNRTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 252
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 1 cut(s) 615
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 396, 640
NspV TTCGAA 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 540
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 401
PflFI GACNNNGTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 630
PpuMI RGGWCCY 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 396, 640
PspPI GGNCC 1 cut(s) 639
PspPPI RGGWCCY 1 cut(s) 639
PsyI GACNNNGTC 1 cut(s) 225
RsaI GTAC 2 cut(s) 51, 295
RsaNI GTAC 2 cut(s) 50, 294
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 3 cut(s) 182, 420, 512
SatI GCNGC 1 cut(s) 629
Sau3AI GATC 1 cut(s) 615
Sau96I GGNCC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 6 cut(s) 133, 194, 233, 422, 498, 592
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 437
TaaI ACNGT 5 cut(s) 54, 161, 225, 418, 458
TaiI ACGT 1 cut(s) 512
TaqI TCGA 4 cut(s) 24, 36, 131, 534
TasI AATT 6 cut(s) 133, 194, 233, 422, 498, 592
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 182, 420, 512
Tru9I TTAA 3 cut(s) 182, 420, 512
TscAI CASTG 2 cut(s) 166, 230
TseI GCWGC 1 cut(s) 628
TspDTI ATGAA 2 cut(s) 395, 566
TspRI CASTG 2 cut(s) 166, 230
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 639
XapI RAATTY 5 cut(s) 133, 194, 422, 498, 592
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.