Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

54698959 .. 54700188

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCGCCCCAGAAATGGTTTCAGCTCAAATCCTCAAATAGTTCATGGTTGTATACTAGAATTACTGAACAAGAAACTTGAAAACCAGAAATGGGTATCACGTAGAGGCACTGTGTTGAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGAGACGTGTAAGTGGATGTCGGTCGAAAGCTGTCTAAGCTGGCTTCAGGAAGTGAAACCAAGATGTGAGTGTGTGGGGCCTTTGATAGTTGTTGGGCTTCCAAATGAATTTGCACAAACAAGAGAGTTGCAGATCCCATCGACCTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

100

Amino Acids

11.27

Weight (kDa)

8.72

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	14, 91
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	80
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	5 cut(s)	24, 120, 137, 180, 189
AluI	AGCT	5 cut(s)	24, 120, 137, 180, 189
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 91
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	14, 91
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	14, 91
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	277
BssMI	GATC	1 cut(s)	282
BssNAI	GTATAC	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZ17I	GTATAC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	8 cut(s)	24, 120, 137, 180, 189, 193, 229, 247
CviKI_1	RGCY	8 cut(s)	24, 120, 137, 180, 189, 193, 229, 247
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	45, 53
FatI	CATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	100, 155
HpyCH4V	TGCA	2 cut(s)	263, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	100, 155
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	22, 98, 175, 182
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	100, 155
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	59, 257
MnlI	CCTC	2 cut(s)	42, 98
MseI	TTAA	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	26, 103, 122, 139, 158, 182, 191, 296, 301
Sse9I	AATT	2 cut(s)	59, 257
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	103, 158
TaqI	TCGA	2 cut(s)	174, 290
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	59, 257
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	32, 270
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.