Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

56309510 .. 56310827

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGCGGTCTCTGGTGCTGCTGCAGTTTCAAATGGGATAGCTGAGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCAGACTTCGGGACAGACATCGTCTCGTGTGGATTTGTGAAAGACTACAAATCAATGAGGCTTTGGGAGAGGTCATTTAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

55

Amino Acids

5.94

Weight (kDa)

4.98

Isoelectric Point (pI)

22.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	30
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	3 cut(s)	13, 72, 109
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	17, 20
BauI	CACGAG	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	4, 7
BcoDI	GTCTC	3 cut(s)	13, 72, 109
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	18, 21
BlsI	GCNGC	2 cut(s)	19, 22
BsaI	GGTCTC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	4, 7
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	3 cut(s)	13, 72, 109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	13
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	3 cut(s)	13, 72, 109
BstMBI	GATC	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	4, 7
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	2 cut(s)	41, 142
CviKI_1	RGCY	2 cut(s)	41, 142
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	1 cut(s)	168
FaiI	YATR	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	18, 21
Fsp4HI	GCNGC	2 cut(s)	18, 21
GluI	GCNGC	2 cut(s)	18, 21
Hin1II	CATG	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	83, 91
HpyCH4V	TGCA	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	2 cut(s)	4, 7
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	132, 144
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	19, 22
PstI	CTGCAG	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	101
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	1 cut(s)	79
SetI	ASST	2 cut(s)	43, 155
SfcI	CTRYAG	1 cut(s)	21
SgeI	CNNG	5 cut(s)	24, 95, 103, 118, 120
SsiI	CCGC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	17, 20
Tth111I	GACNNNGTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.