RchiOBHm_Chr1g0338921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001045
Physical Location & Seq
Reverse (-)
30110988 .. 30112148
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56592

Sequence Viewer

Length: 231 bp
ATGTTGAAGCGGAAGGCATCATGGAAGAGGATGTTCTCCCTCACCATCTCCTTAAGGCCATCACCGACCGTAATCCAAGCGGTCGTCATCCTCTCCGTCGATCTGAGAGCATGCCCGACAATCGCTACTACGGCAGCAACGAGTACATCAACTAGAAGTTGGGGTTTTTATACGAATTTCTTTTTGGGATTTGGATTTTACGGGCCTAGGGTTCTTTTTTCATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.54

Weight (kDa)

11.0

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 10, 80
AcsI RAATTY 1 cut(s) 175
AfaI GTAC 1 cut(s) 145
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AoxI GGCC 2 cut(s) 56, 203
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 175
AspA2I CCTAGG 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 34, 54
AvrII CCTAGG 1 cut(s) 206
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 53, 67
BceAI ACGGC 1 cut(s) 147
BfaI CTAG 2 cut(s) 153, 207
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 135
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 36, 87
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 146
Bsh1285I CGRYCG 2 cut(s) 69, 84
BshFI GGCC 2 cut(s) 58, 205
BsiEI CGRYCG 2 cut(s) 69, 84
BsnI GGCC 2 cut(s) 58, 205
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 10, 80
BspANI GGCC 2 cut(s) 58, 205
BspCNI CTCAG 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 36, 87
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 2 cut(s) 69, 84
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 58, 205
BtsCI GGATG 2 cut(s) 36, 87
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 21, 111
CviJI RGCY 2 cut(s) 58, 205
CviKI_1 RGCY 2 cut(s) 58, 205
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 2 cut(s) 24, 114
FaiI YATR 4 cut(s) 22, 112, 171, 223
FatI CATG 2 cut(s) 20, 110
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 43, 74
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 2 cut(s) 153, 207
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 58, 205
Hin1II CATG 2 cut(s) 24, 114
HphI GGTGA 2 cut(s) 34, 54
Hpy188I TCNGA 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 2 cut(s) 24, 114
Kzo9I GATC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 153, 207
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 37
MluCI AATT 1 cut(s) 175
MnlI CCTC 3 cut(s) 21, 50, 101
MseI TTAA 2 cut(s) 53, 229
MspCI CTTAAG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 24, 114
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PkrI GCNGC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 53, 229
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 203
SetI ASST 1 cut(s) 228
SfaNI GCATC 1 cut(s) 26
SgeI CNNG 8 cut(s) 33, 89, 123, 127, 153, 165, 214, 219
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 114
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 10, 80
SspMI CTAG 2 cut(s) 153, 207
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 175
TatI WGTACW 1 cut(s) 143
Tru1I TTAA 2 cut(s) 53, 229
Tru9I TTAA 2 cut(s) 53, 229
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 52
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 114
XmaJI CCTAGG 1 cut(s) 206
XspI CTAG 2 cut(s) 153, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.