Rmu_sc0000569.1_g000024

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000569.1
OG0001045
Physical Location & Seq
Reverse (-)
83008 .. 89379
6372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000569.1_g000024.1.cds

Sequence Viewer

Length: 1110 bp
atgtatgggagggggagagattttgcaaaggaggccatgcatcatgtacgagaggctgagagatcatgcaaagaaggtcatgagatcttaaactggaggctgagagattatactaacaagctctggcgatcccaggccacgatacaagcacagacaggctcgccccctccgtacggtcctccctatggtggtgacttgtggcgatttgaagcgtacatggcagatcggggcagtgaaggcagaccagaccatattttcctcctctggcgacggccgagcacgaaatcgatcttgttaggtttgtggaagctttctccttcaacccttggtggtggttttggacgattttcacctgagcatagtcaactcagggtgaacagtagtatttggcttgtggcatcgatcggcattgatctaggccgagtttgttcaagctccaagcgtgttccggcgcgattcactgcactctcgcccactttcacaatggcagattttaccaaagaactcaaaccccttttcaattacaatcgcgtacagcctcttaatgtcatctcctttgacgacgacgacggtgtgttcaatgtttctattgtagaggatgaggcgtctgtttctcctccgaccaagaagaggaagaaggcttcgaattcagtagttgaaaaggttgatgacagtgtgaaggttggttcttgcttaatccgccaagaatctggtgcttcaccttgctggatacgacaatttgtgttaagtgttggaattttgggttctgggtgtgataaagatagaccccttgtaaggagttttgatgatttctgggtttgtttgttgggtgaaaaagtgaggaagcacattctgaagctggaacaagacattgagttgcttaaagcagaggctaaaagaaaagttgaatttagttatgatgttattgaaggaactccagaagatattgagtgtgttgagtctggagctcctcaaacttcaagcttcttagactctaatgaggccatgagagtagccaagcttgcaaagctagacactgaagtaaatttctggatgtattttgctaggagagtactattagacgtactccttttgtggataaaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

369

Amino Acids

41.79

Weight (kDa)

8.37

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 454, 531
AciI CCGC 1 cut(s) 700
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 4 cut(s) 646, 756, 908, 1045
AcuI CTGAAG 2 cut(s) 875, 1059
AcyI GRCGYC 1 cut(s) 605
AfaI GTAC 6 cut(s) 48, 173, 215, 534, 1074, 1086
AfiI CCNNNNNNNGG 5 cut(s) 173, 185, 188, 630, 795
AgsI TTSAA 9 cut(s) 209, 321, 432, 520, 580, 659, 908, 929, 981
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 8 cut(s) 121, 310, 435, 859, 968, 984, 1021, 1030
AluI AGCT 8 cut(s) 121, 310, 435, 859, 968, 984, 1021, 1030
Alw21I GWGCWC 2 cut(s) 281, 970
AlwI GGATC 1 cut(s) 123
AoxI GGCC 5 cut(s) 33, 135, 272, 418, 1002
ApoI RAATTY 4 cut(s) 646, 756, 908, 1045
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 5 cut(s) 203, 342, 385, 711, 842
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 970
Bbv12I GWGCWC 2 cut(s) 281, 970
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 723
BfaI CTAG 3 cut(s) 416, 1031, 1065
BfuI GTATCC 1 cut(s) 723
BglII AGATCT 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 1074
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 49, 407
BpmI CTGGAG 3 cut(s) 115, 921, 984
Bpu10I CCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 644
Bsa29I ATCGAT 2 cut(s) 287, 401
BsaHI GRCGYC 1 cut(s) 605
BsaJI CCNNGG 2 cut(s) 132, 325
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 185, 188, 630, 795
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 134
BseCI ATCGAT 2 cut(s) 287, 401
BseDI CCNNGG 2 cut(s) 132, 325
BseGI GGATG 2 cut(s) 604, 1059
BseLI CCNNNNNNNGG 5 cut(s) 173, 185, 188, 630, 795
BseMII CTCAG 4 cut(s) 48, 92, 345, 382
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 3 cut(s) 251, 606, 960
BseX3I CGGCCG 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 2 cut(s) 454, 531
Bsh1285I CGRYCG 2 cut(s) 275, 405
BshFI GGCC 5 cut(s) 35, 137, 274, 420, 1004
BshVI ATCGAT 2 cut(s) 287, 401
BsiEI CGRYCG 2 cut(s) 275, 405
BsiHKAI GWGCWC 2 cut(s) 281, 970
BsiSI CCGG 1 cut(s) 449
BsiWI CGTACG 1 cut(s) 171
BslI CCNNNNNNNGG 5 cut(s) 173, 185, 188, 630, 795
BsnI GGCC 5 cut(s) 35, 137, 274, 420, 1004
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 281, 970
Bsp143I GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
BspACI CCGC 1 cut(s) 700
BspANI GGCC 5 cut(s) 35, 137, 274, 420, 1004
BspCNI CTCAG 4 cut(s) 49, 93, 346, 381
BspDI ATCGAT 2 cut(s) 287, 401
BspFNI CGCG 2 cut(s) 454, 531
BspHI TCATGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 644
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 132, 325
BssMI GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
BssNI GRCGYC 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 4 cut(s) 176, 380, 572, 674
Bst6I CTCTTC 1 cut(s) 623
BstACI GRCGYC 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 161, 1023
BstDEI CTNAG 5 cut(s) 57, 101, 354, 368, 988
BstF5I GGATG 2 cut(s) 604, 1059
BstFNI CGCG 2 cut(s) 454, 531
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 7 cut(s) 65, 87, 131, 226, 291, 405, 415
BstMBI GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
BstMCI CGRYCG 2 cut(s) 275, 405
BstMWI GCNNNNNNNGC 6 cut(s) 32, 218, 237, 699, 1022, 1027
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 2 cut(s) 454, 531
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 272
Bsu15I ATCGAT 2 cut(s) 287, 401
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 5 cut(s) 35, 137, 274, 420, 1004
BsuTUI ATCGAT 2 cut(s) 287, 401
BtsCI GGATG 2 cut(s) 604, 1059
BtsI GCAGTG 2 cut(s) 238, 459
BtsIMutI CAGTG 4 cut(s) 238, 459, 679, 1035
Cac8I GCNNGC 2 cut(s) 161, 1023
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 2 cut(s) 287, 401
CseI GACGC 1 cut(s) 594
Csp6I GTAC 6 cut(s) 47, 172, 214, 533, 1073, 1085
CviAII CATG 6 cut(s) 37, 44, 66, 80, 217, 1006
CviQI GTAC 6 cut(s) 47, 172, 214, 533, 1073, 1085
DdeI CTNAG 5 cut(s) 57, 101, 354, 368, 988
DpnI GATC 7 cut(s) 64, 86, 130, 225, 290, 404, 414
DpnII GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
EaeI YGGCCR 1 cut(s) 272
EagI CGGCCG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 968
EclXI CGGCCG 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 970
Eco47I GGWCC 1 cut(s) 176
Eco52I CGGCCG 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 968
Eco57I CTGAAG 2 cut(s) 875, 1059
EcoICRI GAGCTC 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 970
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 6 cut(s) 40, 47, 69, 83, 220, 1009
FatI CATG 6 cut(s) 36, 43, 65, 79, 216, 1005
FokI GGATG 2 cut(s) 611, 1066
FriOI GRGCYC 1 cut(s) 970
FspBI CTAG 3 cut(s) 416, 1031, 1065
GlaI GCGC 1 cut(s) 453
GsuI CTGGAG 3 cut(s) 115, 921, 984
HaeIII GGCC 5 cut(s) 35, 137, 274, 420, 1004
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 594
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 605
Hin1II CATG 6 cut(s) 40, 47, 69, 83, 220, 1009
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HindIII AAGCTT 3 cut(s) 308, 982, 1019
HinfI GANTC 4 cut(s) 456, 707, 959, 992
HpaII CCGG 1 cut(s) 449
HphI GGTGA 5 cut(s) 203, 342, 385, 711, 842
Hpy166II GTNNAC 2 cut(s) 365, 376
Hpy188I TCNGA 2 cut(s) 621, 855
Hpy188III TCNNGA 4 cut(s) 80, 938, 963, 1051
Hpy8I GTNNAC 2 cut(s) 365, 376
Hpy99I CGWCG 4 cut(s) 273, 566, 569, 572
HpyAV CCTTC 6 cut(s) 68, 230, 327, 631, 673, 923
HpyCH4III ACNGT 4 cut(s) 176, 380, 572, 674
HpyCH4IV ACGT 1 cut(s) 1083
HpyCH4V TGCA 5 cut(s) 26, 40, 69, 464, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 218, 237, 699, 1022, 1027
HpyF3I CTNAG 5 cut(s) 57, 101, 354, 368, 988
HpySE526I ACGT 1 cut(s) 1083
Hsp92I GRCGYC 1 cut(s) 605
Hsp92II CATG 6 cut(s) 40, 47, 69, 83, 220, 1009
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
LmnI GCTCC 3 cut(s) 440, 965, 973
LweI GCATC 2 cut(s) 49, 407
MaeI CTAG 3 cut(s) 416, 1031, 1065
MaeII ACGT 1 cut(s) 1083
MaeIII GTNAC 1 cut(s) 191
MalI GATC 7 cut(s) 64, 86, 130, 225, 290, 404, 414
MboI GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
MboII GAAGA 3 cut(s) 640, 646, 953
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 281, 970
MluCI AATT 6 cut(s) 520, 646, 737, 756, 908, 1045
MlyI GAGTC 2 cut(s) 968, 986
MmeI TCCRAC 2 cut(s) 644, 733
Mph1103I ATGCAT 1 cut(s) 42
MseI TTAA 5 cut(s) 89, 543, 695, 746, 882
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 454, 531
MwoI GCNNNNNNNGC 6 cut(s) 32, 218, 237, 699, 1022, 1027
NdeII GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
NlaIII CATG 6 cut(s) 40, 47, 69, 83, 220, 1009
NmeAIII GCCGAG 2 cut(s) 300, 446
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 42
NspV TTCGAA 1 cut(s) 644
PagI TCATGA 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 2 cut(s) 456, 707
Pfl23II CGTACG 1 cut(s) 171
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 2 cut(s) 967, 986
PpsI GAGTC 2 cut(s) 967, 986
Psp124BI GAGCTC 1 cut(s) 970
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspLI CGTACG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 84
PvuI CGATCG 1 cut(s) 405
RsaI GTAC 6 cut(s) 48, 173, 215, 534, 1074, 1086
RsaNI GTAC 6 cut(s) 47, 172, 214, 533, 1073, 1085
SacI GAGCTC 1 cut(s) 970
SaqAI TTAA 5 cut(s) 89, 543, 695, 746, 882
Sau3AI GATC 7 cut(s) 62, 84, 128, 223, 288, 402, 412
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 1074
SchI GAGTC 2 cut(s) 968, 986
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 281, 970
SfaNI GCATC 2 cut(s) 49, 407
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 176
Sse9I AATT 6 cut(s) 520, 646, 737, 756, 908, 1045
SsiI CCGC 1 cut(s) 700
SspMI CTAG 3 cut(s) 416, 1031, 1065
SstI GAGCTC 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 4 cut(s) 176, 380, 572, 674
TaiI ACGT 1 cut(s) 1086
TaqI TCGA 3 cut(s) 287, 401, 644
TasI AATT 6 cut(s) 520, 646, 737, 756, 908, 1045
TatI WGTACW 1 cut(s) 1072
TfiI GAWTC 2 cut(s) 456, 707
Tru1I TTAA 5 cut(s) 89, 543, 695, 746, 882
Tru9I TTAA 5 cut(s) 89, 543, 695, 746, 882
TscAI CASTG 4 cut(s) 238, 466, 679, 1042
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 4 cut(s) 238, 466, 679, 1042
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 4 cut(s) 646, 756, 908, 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XspI CTAG 3 cut(s) 416, 1031, 1065
ZrmI AGTACT 1 cut(s) 1074
Zsp2I ATGCAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.