RLG00000019210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001045
Physical Location & Seq
Forward (+)
48380104 .. 48381718
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019210

Sequence Viewer

Length: 627 bp
ATGCTCAAATTTACAGAGGTGAGATTTGGAGACTCCAACTCCACCACATTATTTAAGGATCCCTCTCTCTCTTCTTTGGTGACAATTGCAGCAAATCATGGCGTACCTGTCCAAAATCCAGAGGGGCAGCCATATCCAGCCATTCGGGTGCACGATTACAGTGGAAGAGTCCACCTTCGGGGTCATTGCCTACAGAGAGAACGCCCGGGACCTGGTCGACCTGATGCCCCGGTCGGTTCTGGTGCTCAAGAGGCGGGAGATCCTCACAATCGGCTTGACATCCTCATGGCAGAGGCTATTCTCCTTCACCATCTCCAGTACCAGCTTCCCAACGCCATCAATGACAATAATCCAAAGAGGTCGTTATCCTCTCCGTCATGCCCGGAAACTGCTACTACATCGTCGTGTTCCAGCCCCACGACCGCATCATGGGCTCCCCTCCGGCAGTCACTTGACCCATGGTTACTACACCTCGATCTACTTGGAGAGTCTGCCCTATATGGTGATTCCTCCACTGGGTCATTAACAAACGACAAGCTGGAGGAGAAGGCCTTGGATTTCAGGTCAAGATTGACGCCTAGATTTTGTGTGATTTTTCGAATCGGAGGAATTAAATTGGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.73

Weight (kDa)

6.44

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 217
AciI CCGC 2 cut(s) 254, 423
AclWI GGATC 3 cut(s) 53, 66, 254
AcsI RAATTY 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 575
AfaI GTAC 2 cut(s) 105, 320
AfiI CCNNNNNNNGG 4 cut(s) 178, 212, 429, 516
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 325, 538
AluI AGCT 2 cut(s) 325, 538
Alw21I GWGCWC 2 cut(s) 153, 247
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 3 cut(s) 53, 66, 254
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 549
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 89, 127
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 4 cut(s) 206, 207, 230, 383
AsuHPI GGTGA 4 cut(s) 31, 91, 299, 515
AsuII TTCGAA 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 153
BamHI GGATCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 153, 247
BbvI GCAGC 2 cut(s) 101, 139
BccI CCATC 2 cut(s) 318, 344
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 4 cut(s) 206, 207, 230, 383
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 90, 128
BlsI GCNGC 2 cut(s) 91, 129
Bme1390I CCNGG 5 cut(s) 206, 207, 213, 230, 383
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 60, 210, 435
BmrFI CCNGG 5 cut(s) 206, 207, 213, 230, 383
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 214, 434
BmuI ACTGGG 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 299, 560
Bpu14I TTCGAA 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 231
BpuMI CCSGG 4 cut(s) 206, 207, 230, 383
BsaHI GRCGYC 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 205, 228, 458, 552
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 212, 429, 516
Bse1I ACTGG 2 cut(s) 316, 520
Bse3DI GCAATG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 205, 228, 458, 552
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 178, 212, 429, 516
BseMI GCAATG 1 cut(s) 184
BseNI ACTGG 2 cut(s) 316, 520
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 2 cut(s) 101, 139
Bsh1285I CGRYCG 2 cut(s) 234, 423
BshFI GGCC 1 cut(s) 551
BsiEI CGRYCG 2 cut(s) 234, 423
BsiHKAI GWGCWC 2 cut(s) 153, 247
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 4 cut(s) 206, 230, 383, 442
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 4 cut(s) 178, 212, 429, 516
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 598
Bsp1286I GDGCHC 3 cut(s) 153, 247, 436
Bsp143I GATC 3 cut(s) 58, 259, 475
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 2 cut(s) 254, 423
BspANI GGCC 1 cut(s) 551
BspLI GGNNCC 3 cut(s) 60, 210, 435
BspPI GGATC 3 cut(s) 53, 66, 254
BspT104I TTCGAA 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 2 cut(s) 316, 520
BssECI CCNNGG 4 cut(s) 205, 228, 458, 552
BssMI GATC 3 cut(s) 58, 259, 475
BssNI GRCGYC 1 cut(s) 575
BssT1I CCWWGG 2 cut(s) 458, 552
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 76, 160
BstACI GRCGYC 1 cut(s) 575
BstBI TTCGAA 1 cut(s) 598
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 3 cut(s) 61, 262, 478
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 58, 259, 475
BstMCI CGRYCG 2 cut(s) 234, 423
BstMWI GCNNNNNNNGC 2 cut(s) 251, 431
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 5 cut(s) 204, 205, 211, 228, 381
BstSFI CTRYAG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 101, 139
BstX2I RGATCY 2 cut(s) 58, 259
BstYI RGATCY 2 cut(s) 58, 259
BsuRI GGCC 1 cut(s) 551
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 166, 513
Cfr13I GGNCC 1 cut(s) 209
Cfr9I CCCGGG 1 cut(s) 205
CseI GACGC 1 cut(s) 583
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 2 cut(s) 104, 319
CviAII CATG 5 cut(s) 98, 286, 378, 429, 459
CviJI RGCY 9 cut(s) 130, 140, 274, 296, 325, 414, 434, 538, 551
CviKI_1 RGCY 9 cut(s) 130, 140, 274, 296, 325, 414, 434, 538, 551
CviQI GTAC 2 cut(s) 104, 319
DpnI GATC 3 cut(s) 60, 261, 477
DpnII GATC 3 cut(s) 58, 259, 475
Eam1104I CTCTTC 2 cut(s) 76, 160
EarI CTCTTC 2 cut(s) 76, 160
Eco130I CCWWGG 2 cut(s) 458, 552
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 458, 552
EcoT38I GRGCYC 1 cut(s) 436
ErhI CCWWGG 2 cut(s) 458, 552
FaeI CATG 5 cut(s) 101, 289, 381, 432, 462
FaiI YATR 8 cut(s) 99, 133, 287, 379, 430, 460, 499, 501
FaqI GGGAC 1 cut(s) 222
FatI CATG 5 cut(s) 97, 285, 377, 428, 458
FauI CCCGC 1 cut(s) 247
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 90, 128
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 2 cut(s) 90, 128
FspBI CTAG 1 cut(s) 579
GluI GCNGC 2 cut(s) 90, 128
GsuI CTGGAG 2 cut(s) 299, 560
HaeIII GGCC 1 cut(s) 551
HapII CCGG 4 cut(s) 206, 230, 383, 442
HgaI GACGC 1 cut(s) 583
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 5 cut(s) 101, 289, 381, 432, 462
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 5 cut(s) 32, 168, 488, 506, 600
HpaII CCGG 4 cut(s) 206, 230, 383, 442
HphI GGTGA 4 cut(s) 31, 91, 299, 515
Hpy166II GTNNAC 3 cut(s) 151, 172, 218
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 3 cut(s) 119, 248, 567
Hpy8I GTNNAC 3 cut(s) 151, 172, 218
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 3 cut(s) 185, 314, 541
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 89, 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 431
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 5 cut(s) 101, 289, 381, 432, 462
Kzo9I GATC 3 cut(s) 58, 259, 475
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 2 cut(s) 101, 139
LweI GCATC 2 cut(s) 214, 434
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 3 cut(s) 79, 447, 462
MalI GATC 3 cut(s) 60, 261, 477
MboI GATC 3 cut(s) 58, 259, 475
MboII GAAGA 2 cut(s) 63, 177
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 2 cut(s) 58, 259
MhlI GDGCHC 3 cut(s) 153, 247, 436
MluCI AATT 5 cut(s) 8, 84, 609, 614, 622
MlyI GAGTC 3 cut(s) 26, 177, 497
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 3 cut(s) 54, 524, 612
MslI CAYNNNNRTG 3 cut(s) 146, 284, 403
MspI CCGG 4 cut(s) 206, 230, 383, 442
MspR9I CCNGG 5 cut(s) 206, 207, 213, 230, 383
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 251, 431
NciI CCSGG 4 cut(s) 206, 207, 230, 383
NcoI CCATGG 1 cut(s) 458
NdeII GATC 3 cut(s) 58, 259, 475
NlaIII CATG 5 cut(s) 101, 289, 381, 432, 462
NlaIV GGNNCC 3 cut(s) 60, 210, 435
NmuCI GTSAC 2 cut(s) 79, 447
NspV TTCGAA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 551
PfeI GAWTC 2 cut(s) 506, 600
PflFI GACNNNGTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 91, 129
PleI GAGTC 3 cut(s) 26, 176, 496
PpsI GAGTC 3 cut(s) 26, 176, 496
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 60, 210, 435
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
PsuI RGATCY 2 cut(s) 58, 259
PsyI GACNNNGTC 1 cut(s) 213
RsaI GTAC 2 cut(s) 105, 320
RsaNI GTAC 2 cut(s) 104, 319
RseI CAYNNNNRTG 3 cut(s) 146, 284, 403
SalI GTCGAC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 54, 524, 612
SatI GCNGC 2 cut(s) 90, 128
Sau3AI GATC 3 cut(s) 58, 259, 475
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 3 cut(s) 26, 177, 497
ScrFI CCNGG 5 cut(s) 206, 207, 213, 230, 383
SduI GDGCHC 3 cut(s) 153, 247, 436
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 2 cut(s) 214, 434
SfcI CTRYAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 598
SinI GGWCC 1 cut(s) 209
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 3 cut(s) 146, 284, 403
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 5 cut(s) 8, 84, 609, 614, 622
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 2 cut(s) 254, 423
SspMI CTAG 1 cut(s) 579
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 5 cut(s) 204, 205, 211, 228, 381
StyI CCWWGG 2 cut(s) 458, 552
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 217, 474, 598
TasI AATT 5 cut(s) 8, 84, 609, 614, 622
TfiI GAWTC 2 cut(s) 506, 600
Tru1I TTAA 3 cut(s) 54, 524, 612
Tru9I TTAA 3 cut(s) 54, 524, 612
TscAI CASTG 2 cut(s) 166, 520
TseFI GTSAC 2 cut(s) 79, 447
TseI GCWGC 2 cut(s) 89, 127
Tsp45I GTSAC 2 cut(s) 79, 447
TspGWI ACGGA 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 2 cut(s) 166, 520
Tth111I GACNNNGTC 1 cut(s) 213
VneI GTGCAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 8
XmaI CCCGGG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.