Rw6G022360

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001045
Physical Location & Seq
Reverse (-)
44235441 .. 44235906
466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022360.1

Sequence Viewer

Length: 321 bp
ATGCAACATGTGGATTACCAAAAAGTGTCTTCTTTGCTTCAAGTCTTTGTGAGGAAGCACATTCTGAAGCTGGAACAAGACATTGAGTTGCTTAAAGCAGAGGCTAAAAGAAAAGTTGAATTTAGTTATGATGTTATTGAAGGAACTCCAGAAGATATTGAGTGTGTTGAGTCTGGAGCTCCTCAAACTTCAAGCTTCTTAGACTCTAATGAGGCCATGAGAGTAGCCAAGCTTGCAAAGCTAGACACTGAAGTAAATTTCTGGATGTATTTTGCTAGGAGAGTACTATTAGACGTACTCCTTTTGTGGATAAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

106

Amino Acids

12.36

Weight (kDa)

5.18

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 119, 256
AcuI CTGAAG 2 cut(s) 86, 270
AfaI GTAC 2 cut(s) 285, 297
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 41, 119, 140, 192
AluBI AGCT 5 cut(s) 70, 179, 195, 232, 241
AluI AGCT 5 cut(s) 70, 179, 195, 232, 241
Alw21I GWGCWC 1 cut(s) 181
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 2 cut(s) 119, 256
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 181
BfaI CTAG 2 cut(s) 242, 276
BmcAI AGTACT 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 2 cut(s) 132, 195
BseGI GGATG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 181
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 181
BspANI GGCC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 233, 238
BstNSI RCATGY 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 284, 296
CviAII CATG 2 cut(s) 8, 217
CviJI RGCY 8 cut(s) 70, 104, 179, 195, 215, 227, 232, 241
CviKI_1 RGCY 8 cut(s) 70, 104, 179, 195, 215, 227, 232, 241
CviQI GTAC 2 cut(s) 284, 296
DdeI CTNAG 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 179
Eco57I CTGAAG 2 cut(s) 86, 270
EcoICRI GAGCTC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 181
FaeI CATG 2 cut(s) 11, 220
FaiI YATR 3 cut(s) 9, 129, 218
FatI CATG 2 cut(s) 7, 216
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 181
FspBI CTAG 2 cut(s) 242, 276
GsuI CTGGAG 2 cut(s) 132, 195
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 2 cut(s) 11, 220
HindIII AAGCTT 2 cut(s) 193, 230
HinfI GANTC 2 cut(s) 170, 203
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 149, 174, 262
HpyAV CCTTC 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 4, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 238
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 11, 220
LmnI GCTCC 2 cut(s) 176, 184
LpnPI CCDG 4 cut(s) 56, 159, 162, 247
MaeI CTAG 2 cut(s) 242, 276
MaeII ACGT 1 cut(s) 294
MboII GAAGA 2 cut(s) 21, 164
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 119, 256
MlyI GAGTC 2 cut(s) 179, 197
MnlI CCTC 4 cut(s) 45, 94, 192, 205
MseI TTAA 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 233, 238
NlaIII CATG 2 cut(s) 11, 220
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PleI GAGTC 2 cut(s) 178, 197
PpsI GAGTC 2 cut(s) 178, 197
PscI ACATGT 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 181
RsaI GTAC 2 cut(s) 285, 297
RsaNI GTAC 2 cut(s) 284, 296
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 93
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 2 cut(s) 179, 197
SduI GDGCHC 1 cut(s) 181
SetI ASST 6 cut(s) 72, 181, 197, 234, 243, 297
Sse9I AATT 2 cut(s) 119, 256
SspMI CTAG 2 cut(s) 242, 276
SstI GAGCTC 1 cut(s) 181
TaiI ACGT 1 cut(s) 297
TasI AATT 2 cut(s) 119, 256
TatI WGTACW 1 cut(s) 283
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 253
TspRI CASTG 1 cut(s) 253
XapI RAATTY 2 cut(s) 119, 256
XceI RCATGY 1 cut(s) 11
XspI CTAG 2 cut(s) 242, 276
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.