Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

11168394 .. 11169313

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGTATCACGAGAGGCATGGTGTTGAGCTCCTTCAAAACTAATGCTACTTCTTTGGAAGCTGGTGCTGCTGTAGTATCAAATGGGATAGCTGTGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCGACTTCTTCGAGACGAGACATTGTCTCGTGTGGATTTGTGAAAGACCTACAAATCAATGAGGCTTTGGGAGAGGTAGCTGATGCTAGAGACCGGAAGCTGTGGAAGTATGTGGACGAAGCTCAGTTTGGGCCTGGGCCGCCCATCAATTTGGTGTTTGTTAGGGGAAAATTAGTGAATGCAGATCAAAATTTACAAGGTTTGCTTATATCACTCATACTTCAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

120

Amino Acids

12.88

Weight (kDa)

6.55

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	30, 62, 92, 212, 232, 254
AluI	AGCT	6 cut(s)	30, 62, 92, 212, 232, 254
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	5 cut(s)	123, 139, 144, 163, 216
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	263, 269
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	263, 269
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	2 cut(s)	10, 160
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	5 cut(s)	123, 139, 144, 163, 216
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	2 cut(s)	69, 272
BlsI	GCNGC	2 cut(s)	70, 273
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	263, 269
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	265, 271
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	226
BsmAI	GTCTC	5 cut(s)	123, 139, 144, 163, 216
BsmBI	CGTCTC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	265, 271
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	130, 316
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	2 cut(s)	265, 271
BspCNI	CTCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	130, 316
BssSI	CACGAG	2 cut(s)	10, 160
Bst2BI	CACGAG	2 cut(s)	10, 160
Bst2UI	CCWGG	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	133, 319
BstMAI	GTCTC	5 cut(s)	123, 139, 144, 163, 216
BstMBI	GATC	2 cut(s)	130, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 271
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	265, 271
Cfr13I	GGNCC	2 cut(s)	263, 269
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	9 cut(s)	30, 62, 92, 197, 212, 232, 254, 265, 271
CviKI_1	RGCY	9 cut(s)	30, 62, 92, 197, 212, 232, 254, 265, 271
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	132, 318
DpnII	GATC	2 cut(s)	130, 316
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 243, 341, 350
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	69, 272
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	69, 272
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	2 cut(s)	69, 272
HaeIII	GGCC	2 cut(s)	265, 271
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	1 cut(s)	22
HpaII	CCGG	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	10, 144
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 271
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	130, 316
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	48, 239, 252, 279
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	219
MalI	GATC	2 cut(s)	132, 318
MboI	GATC	2 cut(s)	130, 316
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	3 cut(s)	280, 302, 322
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	8, 187, 199
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	68, 271
NdeII	GATC	2 cut(s)	130, 316
NlaIII	CATG	1 cut(s)	22
PctI	GAATGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	70, 273
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	263, 269
PsyI	GACNNNGTC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	69, 272
Sau3AI	GATC	2 cut(s)	130, 316
Sau96I	GGNCC	2 cut(s)	263, 269
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	32, 64, 94, 183, 210, 214, 234, 256, 334
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	280, 302, 322
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	265
TaqI	TCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	280, 302, 322
TauI	GCSGC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	68
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	322
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.