Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

65469165 .. 65472383

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG497500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTAATGGTTGTGGCAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATATTGAGGTCTAAGGTACTATCACACAACTGGGATAATGAAGATGAGCTCGACAAGATTGAAAATTTCACTTTATCTTCTTCTTCAGCTAATCTGGGCTCTGTGGAGGCTTTGGATAAATCGAAGTATATGGATGACCTTCGAGCAGTAAGGAACAGGACCTTGAGTTGCTTAAAGCACATGCTAAAAGAAAAGTTGAATTTAGTTCTAATGCTATTGAAGAAACTCCAGAAGATATTGAGAGCGTTGAGTCTGGGAGCTCCTCAAACTTCAAGCTCCTCAGACCCCAATGAGGCCATGAGAACAGCAAAGCTAGACACTCTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

9.12

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	5 - 30	2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	166, 301
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	4 cut(s)	164, 301, 322, 375
AluBI	AGCT	6 cut(s)	68, 151, 191, 362, 378, 415
AluI	AGCT	6 cut(s)	68, 151, 191, 362, 378, 415
Alw21I	GWGCWC	2 cut(s)	153, 364
AoxI	GGCC	1 cut(s)	396
ApoI	RAATTY	2 cut(s)	166, 301
AseI	ATTAAT	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	46
BanII	GRGCYC	3 cut(s)	153, 203, 364
Bbv12I	GWGCWC	2 cut(s)	153, 364
BfaI	CTAG	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	142
BpmI	CTGGAG	2 cut(s)	33, 314
BpuEI	CTTGAG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	354, 370
BseSI	GKGCMC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	153, 364
BslI	CCNNNNNNNGG	1 cut(s)	394
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	4 cut(s)	46, 153, 203, 364
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	395
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	114, 382
BstF5I	GGATG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	283, 400
CviJI	RGCY	9 cut(s)	68, 151, 191, 201, 212, 362, 378, 398, 415
CviKI_1	RGCY	9 cut(s)	68, 151, 191, 201, 212, 362, 378, 398, 415
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	114, 382
Ecl136II	GAGCTC	2 cut(s)	151, 362
Eco24I	GRGCYC	3 cut(s)	153, 203, 364
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	2 cut(s)	151, 362
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	2 cut(s)	151, 362
EcoO109I	RGGNCCY	1 cut(s)	261
EcoT38I	GRGCYC	3 cut(s)	153, 203, 364
FaeI	CATG	2 cut(s)	286, 403
FaiI	YATR	7 cut(s)	37, 39, 99, 231, 233, 284, 401
FatI	CATG	2 cut(s)	282, 399
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	3 cut(s)	153, 203, 364
FspBI	CTAG	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	2 cut(s)	33, 314
HaeIII	GGCC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	286, 403
HinfI	GANTC	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	114, 382
Hsp92II	CATG	2 cut(s)	286, 403
LmnI	GCTCC	3 cut(s)	359, 367, 383
LpnPI	CCDG	6 cut(s)	54, 118, 182, 244, 341, 344
MaeI	CTAG	1 cut(s)	416
MboII	GAAGA	6 cut(s)	155, 171, 174, 177, 334, 346
MhlI	GDGCHC	4 cut(s)	46, 153, 203, 364
MluCI	AATT	2 cut(s)	166, 301
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	102, 202, 375, 388, 391
MseI	TTAA	3 cut(s)	51, 275, 426
MslI	CAYNNNNRTG	1 cut(s)	36
MspCI	CTTAAG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	37
NlaIII	CATG	2 cut(s)	286, 403
NspI	RCATGY	1 cut(s)	286
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	51
Psp124BI	GAGCTC	2 cut(s)	153, 364
Psp5II	RGGWCCY	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	2 cut(s)	153, 364
SaqAI	TTAA	3 cut(s)	51, 275, 426
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	4 cut(s)	46, 153, 203, 364
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	265, 425
SmoI	CTYRAG	2 cut(s)	265, 425
Sse9I	AATT	2 cut(s)	166, 301
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	2 cut(s)	153, 364
TaqI	TCGA	3 cut(s)	153, 224, 244
TasI	AATT	2 cut(s)	166, 301
Tru1I	TTAA	3 cut(s)	51, 275, 426
Tru9I	TTAA	3 cut(s)	51, 275, 426
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	166, 301
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.