Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

41003418 .. 41005934

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGAAGGCAAGGGCGATCGCAGTGTCGGTGATGGACGCGTTCGAGAAACTGGAGAAGGTCGGAGAAGGGACCTACGGCAAGTACCAGTCCCTCAAGGCCATCACCGGCCATAATCCAAGCGGTCGTCATCCTCTCCGTCGATCTGAGGGCATGTCCAGCAACCGCTACTACACCTCCGTGTTCCAGCCCCACGACCGCATCATGGGCTCCCCTCCGGCGGTCACTTGCCCCACAGTTACTACACCTCCGATGGGAAGAAGATCTCGGCCACCTCGATCTACTTCGAGAGTCTGCCCTGTAAGTGAGAAATTGGTAAGAATGCAGAGCATTGAGGCAATTGCAACTGCTTTGGCATACTTGTACGGCCACCACCCCAAGCTCAGTGATACCAATGCCTTTCGTGTTCTAGCTGTTGCTTCTTTTCTTGATCTTCAGGTATCACATTCTTGTTATGAGTGTGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

157

Amino Acids

17.19

Weight (kDa)

9.57

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	123, 166, 199, 221
AcoI	YGGCCR	3 cut(s)	109, 269, 367
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	86, 365
AfiI	CCNNNNNNNGG	3 cut(s)	205, 220, 254
AflIII	ACRYGT	1 cut(s)	39
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	382, 413
AluI	AGCT	2 cut(s)	382, 413
AoxI	GGCC	4 cut(s)	99, 109, 269, 367
AsiSI	GCGATCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	43, 97
AvaII	GGWCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	212
BccI	CCATC	3 cut(s)	28, 110, 247
BceAI	ACGGC	2 cut(s)	94, 382
BfaI	CTAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	73, 211
BmsI	GCATC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 232, 262
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 220, 254
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	57, 88
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	205, 220, 254
BseMII	CTCAG	2 cut(s)	138, 397
BseNI	ACTGG	2 cut(s)	57, 88
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	3 cut(s)	21, 127, 199
BshFI	GGCC	4 cut(s)	101, 111, 271, 369
BsiEI	CGRYCG	3 cut(s)	21, 127, 199
BsiSI	CCGG	2 cut(s)	108, 218
BslFI	GGGAC	2 cut(s)	76, 85
BslI	CCNNNNNNNGG	3 cut(s)	205, 220, 254
BsmFI	GGGAC	2 cut(s)	76, 85
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	4 cut(s)	101, 111, 271, 369
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	18, 143, 263, 278, 430
BspACI	CCGC	4 cut(s)	123, 166, 199, 221
BspANI	GGCC	4 cut(s)	101, 111, 271, 369
BspCNI	CTCAG	2 cut(s)	139, 396
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	73, 211
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	5 cut(s)	18, 143, 263, 278, 430
Bst4CI	ACNGT	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	147, 383
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	5 cut(s)	21, 146, 266, 281, 433
BstMBI	GATC	5 cut(s)	18, 143, 263, 278, 430
BstMCI	CGRYCG	3 cut(s)	21, 127, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 207
BstNSI	RCATGY	1 cut(s)	157
BstUI	CGCG	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	4 cut(s)	101, 111, 271, 369
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 391
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	85, 364
CviAII	CATG	2 cut(s)	154, 205
CviJI	RGCY	8 cut(s)	101, 111, 190, 210, 271, 369, 382, 413
CviKI_1	RGCY	8 cut(s)	101, 111, 190, 210, 271, 369, 382, 413
CviQI	GTAC	2 cut(s)	85, 364
DdeI	CTNAG	2 cut(s)	147, 383
DpnI	GATC	5 cut(s)	20, 145, 265, 280, 432
DpnII	GATC	5 cut(s)	18, 143, 263, 278, 430
EaeI	YGGCCR	3 cut(s)	109, 269, 367
Eco24I	GRGCYC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	2 cut(s)	157, 208
FaiI	YATR	5 cut(s)	114, 155, 206, 358, 456
FaqI	GGGAC	2 cut(s)	76, 85
FatI	CATG	2 cut(s)	153, 204
FokI	GGATG	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	4 cut(s)	101, 111, 271, 369
HapII	CCGG	2 cut(s)	108, 218
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	157, 208
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	108, 218
HphI	GGTGA	2 cut(s)	43, 97
Hpy188I	TCNGA	3 cut(s)	65, 148, 252
Hpy188III	TCNNGA	4 cut(s)	46, 288, 428, 468
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	52, 62
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	325, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 207
HpyF3I	CTNAG	2 cut(s)	147, 383
Hsp92II	CATG	2 cut(s)	157, 208
Kzo9I	GATC	5 cut(s)	18, 143, 263, 278, 430
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	8 cut(s)	38, 101, 121, 172, 200, 231, 312, 422
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	223, 238
MalI	GATC	5 cut(s)	20, 145, 265, 280, 432
MboI	GATC	5 cut(s)	18, 143, 263, 278, 430
MboII	GAAGA	3 cut(s)	270, 273, 425
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	311, 339
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	104, 142, 144, 187, 225, 258, 285, 328
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	2 cut(s)	108, 218
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	327
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	159, 207
NdeII	GATC	5 cut(s)	18, 143, 263, 278, 430
NlaIII	CATG	2 cut(s)	157, 208
NlaIV	GGNNCC	2 cut(s)	73, 211
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PctI	GAATGC	1 cut(s)	327
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	73, 211
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	21
RgaI	GCGATCGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	86, 365
RsaNI	GTAC	2 cut(s)	85, 364
RseI	CAYNNNNRTG	1 cut(s)	179
Sau3AI	GATC	5 cut(s)	18, 143, 263, 278, 430
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	8 cut(s)	63, 77, 179, 250, 277, 384, 415, 441
SfaAI	GCGATCGC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	210
SgfI	GCGATCGC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	311, 339
SsiI	CCGC	4 cut(s)	123, 166, 199, 221
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	45, 142, 277, 287
TasI	AATT	2 cut(s)	311, 339
TscAI	CASTG	2 cut(s)	30, 391
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspGWI	ACGGA	2 cut(s)	128, 169
TspRI	CASTG	2 cut(s)	30, 391
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.