AT3G55450
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
20557644 .. 20560235
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55450.2

Sequence Viewer

Length: 1170 bp
ATGGGTTCTTGTCTCAGTTCTCGTGTCCTTAATAAGAGCAGTAGTGGTCTCGATGATCTTCATCTCTCGAGCTGTAAATCTTCATCATCAGCTACAGCTCATAAGACAGAAGGAGAAATCCTTAGCTCAACGACCGTCAAAAGCTTTAGCTTTAATGAACTTAAACTCGCTACTAGAAACTTCAGATCGGACTCTGTTGTTGGAGAAGGTGGCTTTGGTTGTGTCTTTAGAGGTTGGCTTGATGAGACTACTCTTACTCCTACCAAATCTAGCTCTGGTCTTGTTATTGCTGTTAAACGACTTAACCCTGATGGTTTTCAAGGTCACCGAGAATGGCTGACAGAGATTAACTATTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTGATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTTGTGTATGAGTTTATGCACAAGGGTAGTCTTGAGAATCATCTGTTTGCAAATGGAAATAAGGATTTTAAGCCGCTATCTTGGATTCTACGGATTAAGGTTGCACTTGATGCAGCTAAAGGTCTTGCATTTCTTCATAGTGATCCCGTCAAAGTCATTTACAGAGACATCAAGGCGTCAAACATCTTACTGGACTCGGACTTCAACGCAAAGCTTTCAGACTTTGGTTTAGCGAGAGACGGTCCAATGGGAGAACAAAGTTATGTTAGTACAAGGGTCATGGGTACTTTTGGGTACGCAGCTCCTGAGTATGTCTCAACAGGCCACTTAAATGCTAGAAGCGACGTATACAGTTTCGGGGTTGTTCTGCTAGAACTACTATGTGGAAGGCAAGCACTAGACCATAACCGCCCGGCCAAGGAGCAAAACCTTGTGGATTGGGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTAACTCACAGTACAAACCCGAAGGAGCAGTGAGACTGGCAAGCATTGCTGTGCAATGCCTATCATTCGAACCCAAATCACGTCCGACCATGGACCAAGTGGTTCGAGCCTTGGTACAGCTGCAAGACAGCGTGGTTAAACCGGCCAATGTTGACCCGCTTAAGGTTAAGGATACCAAGAAACTTGTGGGATTGAAAACAGAAGACAAGTACCAGAGAAACGGTTTAAACAAAAAAACCGTTGGATTGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

43.09

Weight (kDa)

9.19

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 100 - 379 1.8e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 101 - 381 2.4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AciI CCGC 3 cut(s) 497, 832, 1076
AclWI GGATC 1 cut(s) 560
AcoI YGGCCR 2 cut(s) 837, 1062
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 6 cut(s) 694, 709, 719, 932, 1035, 1130
AfiI CCNNNNNNNGG 3 cut(s) 379, 841, 1081
AflII CTTAAG 1 cut(s) 1079
AgsI TTSAA 3 cut(s) 320, 628, 1114
AjiI CACGTC 1 cut(s) 1001
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
Alw26I GTCTC 7 cut(s) 17, 53, 239, 582, 654, 742, 946
AlwI GGATC 1 cut(s) 560
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 3 cut(s) 745, 837, 1062
ApeKI GCWGC 3 cut(s) 536, 722, 1039
ApoI RAATTY 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 665, 1012
AsuC2I CCSGG 1 cut(s) 836
AsuHPI GGTGA 2 cut(s) 317, 362
AsuII TTCGAA 1 cut(s) 987
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 665, 1012
BanII GRGCYC 1 cut(s) 868
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 1128
BbvI GCAGC 3 cut(s) 548, 734, 1026
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 434
BciVI GTATCC 1 cut(s) 1084
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 7 cut(s) 17, 53, 239, 582, 654, 742, 946
BfaI CTAG 5 cut(s) 174, 270, 759, 794, 821
BfmI CTRYAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 1079
BfuI GTATCC 1 cut(s) 1084
BisI GCNGC 4 cut(s) 497, 537, 723, 1040
BlsI GCNGC 4 cut(s) 498, 538, 724, 1041
Bme1390I CCNGG 1 cut(s) 836
Bme18I GGWCC 2 cut(s) 665, 1012
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 1001
BmgT120I GGNCC 2 cut(s) 665, 1012
BmrFI CCNGG 1 cut(s) 836
BmsI GCATC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 1128
BplI GAGNNNNNCTC 2 cut(s) 722, 754
Bpu10I CCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 836
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 599
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 840, 1008, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 841, 1081
Bse118I RCCGGY 1 cut(s) 1060
Bse1I ACTGG 2 cut(s) 618, 960
Bse3DI GCAATG 2 cut(s) 963, 980
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 840, 1008, 1029
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 3 cut(s) 379, 841, 1081
BseMI GCAATG 2 cut(s) 963, 980
BseMII CTCAG 2 cut(s) 28, 720
BseNI ACTGG 2 cut(s) 618, 960
BseXI GCAGC 3 cut(s) 548, 734, 1026
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 747, 839, 1064
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 836, 1061
BslI CCNNNNNNNGG 3 cut(s) 379, 841, 1081
BsmAI GTCTC 7 cut(s) 17, 53, 239, 582, 654, 742, 946
BsmBI CGTCTC 1 cut(s) 654
BsnI GGCC 3 cut(s) 747, 839, 1064
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 1 cut(s) 868
Bsp143I GATC 3 cut(s) 55, 185, 565
Bsp19I CCATGG 1 cut(s) 1008
BspACI CCGC 3 cut(s) 497, 832, 1076
BspANI GGCC 3 cut(s) 747, 839, 1064
BspCNI CTCAG 2 cut(s) 27, 721
BspPI GGATC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 987
BspTI CTTAAG 1 cut(s) 1079
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 963, 980
BsrFI RCCGGY 1 cut(s) 1060
BsrI ACTGG 2 cut(s) 618, 960
BssAI RCCGGY 1 cut(s) 1060
BssECI CCNNGG 3 cut(s) 840, 1008, 1029
BssMI GATC 3 cut(s) 55, 185, 565
BssNAI GTATAC 1 cut(s) 772
BssNI GRCGYC 1 cut(s) 599
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 3 cut(s) 840, 1008, 1029
Bst1107I GTATAC 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 21
Bst4CI ACNGT 6 cut(s) 136, 665, 776, 930, 1142, 1159
BstACI GRCGYC 1 cut(s) 599
BstAFI CTTAAG 1 cut(s) 1079
BstAPI GCANNNNNTGC 2 cut(s) 533, 965
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 3 cut(s) 816, 887, 961
BstDEI CTNAG 3 cut(s) 14, 122, 729
BstDSI CCRYGG 1 cut(s) 1008
BstEII GGTNACC 1 cut(s) 323
BstKTI GATC 3 cut(s) 58, 188, 568
BstMAI GTCTC 7 cut(s) 17, 53, 239, 582, 654, 742, 946
BstMBI GATC 3 cut(s) 55, 185, 565
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 533, 965
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 834
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 548, 734, 1026
BstV2I GAAGAC 1 cut(s) 1128
BstZ17I GTATAC 1 cut(s) 772
BsuI GTATCC 1 cut(s) 1084
BsuRI GGCC 3 cut(s) 747, 839, 1064
BtgI CCRYGG 1 cut(s) 1008
BtrI CACGTC 1 cut(s) 1001
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 3 cut(s) 816, 887, 961
CaiI CAGNNNCTG 1 cut(s) 728
Cfr10I RCCGGY 1 cut(s) 1060
Cfr13I GGNCC 2 cut(s) 665, 1012
CseI GACGC 1 cut(s) 588
Csp6I GTAC 6 cut(s) 693, 708, 718, 931, 1034, 1129
CviAII CATG 2 cut(s) 703, 1009
CviQI GTAC 6 cut(s) 693, 708, 718, 931, 1034, 1129
DdeI CTNAG 3 cut(s) 14, 122, 729
DpnI GATC 3 cut(s) 57, 187, 567
DpnII GATC 3 cut(s) 55, 185, 565
DraI TTTAAA 1 cut(s) 1146
EaeI YGGCCR 2 cut(s) 837, 1062
Eco130I CCWWGG 3 cut(s) 840, 1008, 1029
Eco24I GRGCYC 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 665, 1012
Eco57I CTGAAG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoT14I CCWWGG 3 cut(s) 840, 1008, 1029
EcoT38I GRGCYC 1 cut(s) 868
ErhI CCWWGG 3 cut(s) 840, 1008, 1029
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 2 cut(s) 706, 1012
FatI CATG 2 cut(s) 702, 1008
FauI CCCGC 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 497, 537, 723, 1040
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 4 cut(s) 497, 537, 723, 1040
FspBI CTAG 5 cut(s) 174, 270, 759, 794, 821
GluI GCNGC 4 cut(s) 497, 537, 723, 1040
HaeIII GGCC 3 cut(s) 747, 839, 1064
HapII CCGG 2 cut(s) 836, 1061
HgaI GACGC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 2 cut(s) 706, 1012
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 2 cut(s) 142, 635
HinfI GANTC 4 cut(s) 191, 460, 508, 617
HpaII CCGG 2 cut(s) 836, 1061
HphI GGTGA 2 cut(s) 317, 362
Hpy166II GTNNAC 3 cut(s) 772, 910, 1072
Hpy188I TCNGA 5 cut(s) 185, 190, 622, 643, 1005
Hpy188III TCNNGA 4 cut(s) 50, 67, 455, 728
Hpy8I GTNNAC 3 cut(s) 772, 910, 1072
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 4 cut(s) 104, 200, 804, 935
HpyCH4III ACNGT 6 cut(s) 136, 665, 776, 930, 1142, 1159
HpyCH4IV ACGT 2 cut(s) 768, 1000
HpyCH4V TGCA 7 cut(s) 442, 473, 527, 536, 551, 973, 1042
HpyF10VI GCNNNNNNNGC 2 cut(s) 533, 965
HpyF3I CTNAG 3 cut(s) 14, 122, 729
HpySE526I ACGT 2 cut(s) 768, 1000
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 2 cut(s) 706, 1012
Kzo9I GATC 3 cut(s) 55, 185, 565
LmnI GCTCC 3 cut(s) 730, 844, 944
Lsp1109I GCAGC 3 cut(s) 548, 734, 1026
LweI GCATC 1 cut(s) 523
MaeI CTAG 5 cut(s) 174, 270, 759, 794, 821
MaeII ACGT 2 cut(s) 768, 1000
MaeIII GTNAC 2 cut(s) 323, 368
MalI GATC 3 cut(s) 57, 187, 567
MboI GATC 3 cut(s) 55, 185, 565
MboII GAAGA 5 cut(s) 50, 72, 419, 548, 1133
MhlI GDGCHC 1 cut(s) 868
MluCI AATT 3 cut(s) 376, 386, 903
MlyI GAGTC 2 cut(s) 185, 611
MmeI TCCRAC 3 cut(s) 181, 1028, 1141
MnlI CCTC 2 cut(s) 224, 887
MslI CAYNNNNRTG 2 cut(s) 753, 968
MspA1I CMGCKG 1 cut(s) 1039
MspCI CTTAAG 1 cut(s) 1079
MspI CCGG 2 cut(s) 836, 1061
MspR9I CCNGG 1 cut(s) 836
MssI GTTTAAAC 1 cut(s) 1146
MwoI GCNNNNNNNGC 2 cut(s) 533, 965
NciI CCSGG 1 cut(s) 836
NcoI CCATGG 1 cut(s) 1008
NdeII GATC 3 cut(s) 55, 185, 565
NlaIII CATG 2 cut(s) 706, 1012
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 323, 368
NspV TTCGAA 1 cut(s) 987
PaeR7I CTCGAG 1 cut(s) 67
PfeI GAWTC 2 cut(s) 460, 508
PkrI GCNGC 4 cut(s) 498, 538, 724, 1041
PleI GAGTC 2 cut(s) 185, 611
PmeI GTTTAAAC 1 cut(s) 1146
PpsI GAGTC 2 cut(s) 185, 611
PspEI GGTNACC 1 cut(s) 323
PspPI GGNCC 2 cut(s) 665, 1012
PstNI CAGNNNCTG 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 6 cut(s) 694, 709, 719, 932, 1035, 1130
RsaNI GTAC 6 cut(s) 693, 708, 718, 931, 1034, 1129
RseI CAYNNNNRTG 2 cut(s) 753, 968
SatI GCNGC 4 cut(s) 497, 537, 723, 1040
Sau3AI GATC 3 cut(s) 55, 185, 565
Sau96I GGNCC 2 cut(s) 665, 1012
SchI GAGTC 2 cut(s) 185, 611
ScrFI CCNGG 1 cut(s) 836
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 987
SinI GGWCC 2 cut(s) 665, 1012
SlaI CTCGAG 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 753, 968
SmlI CTYRAG 3 cut(s) 67, 455, 1079
SmoI CTYRAG 3 cut(s) 67, 455, 1079
Sse9I AATT 3 cut(s) 376, 386, 903
SsiI CCGC 3 cut(s) 497, 832, 1076
SspMI CTAG 5 cut(s) 174, 270, 759, 794, 821
StyD4I CCNGG 1 cut(s) 834
StyI CCWWGG 3 cut(s) 840, 1008, 1029
TaaI ACNGT 6 cut(s) 136, 665, 776, 930, 1142, 1159
TaiI ACGT 2 cut(s) 771, 1003
TaqI TCGA 5 cut(s) 51, 68, 868, 987, 1024
TasI AATT 3 cut(s) 376, 386, 903
TatI WGTACW 2 cut(s) 692, 930
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 2 cut(s) 460, 508
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 2 cut(s) 323, 368
TseI GCWGC 3 cut(s) 536, 722, 1039
Tsp45I GTSAC 2 cut(s) 323, 368
TspDTI ATGAA 5 cut(s) 50, 72, 171, 426, 548
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 954
Vha464I CTTAAG 1 cut(s) 1079
VpaK11BI GGWCC 2 cut(s) 665, 1012
XapI RAATTY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 2 cut(s) 1015, 1102
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 771
XspI CTAG 5 cut(s) 174, 270, 759, 794, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.