RchiOBHm_Chr1g0367311
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000305
Physical Location & Seq
Forward (+)
57613376 .. 57619571
6196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59178

Sequence Viewer

Length: 945 bp
ATGACAATGGATTCAACTACAAATGGGCTCAGTATCTGTGATGGTAACATTCCTTGCTTCCCAATTTTGAGCTCTACTGCAAAGAACTTGGCTTCATATGGAACTAGAAGTGCTGAGAGTCTGCCTCAAGGAACTTCATTTGGCTATTGGATTTTTGGTTTCATATCTGCTTCTGAACATTGTGGTTCTGGAATTCTAATAGCAATGTCATCTGTCTCAGTGTCTTCAACTCCTCGAACAGAGGGTGAAATCTTGATGTCTTCCAACCTGATGAACTTCTTCTTTATTGAACTGAAAACAGCCACAAGGAACTTTCGTCCTGACAGTATGATGGGTGAAGGCGGATTTGGTTGTGTTTTTAAGGGCTGGGTTGATGAGAATGCATTAACAGCTGCCAAGCATGGTACTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTCCAGGGTCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTCCGACACTCAAATCTTGTGAAGCTGATTGGTTATTGCTTGGATGCTTGGAGGATGACCACCGGCTTCTGGTGGGCTTCTTACTTTCAACCACTGTCGTGGTCCCTTCATATGAAGATTGCTCTTGGTACTGCTGAGGGTCTAGCATTTCTTCACAGTGATGAGGCAAAAGTGATCTATCAGGACTTTAAAACTTTTAATATCCTGTTGGATTCAGCCTGCAATGCCAAACTCTCTGATTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAAAAGCCACGTCTCAACAAGGGTCATGGGGACATATAGGTATGCGGCTCCTGAGTATATGGCCACTGGTCATTTAACCGCCAAAAGTGATGTATATAGTTTTGGGGTGTTATGCTCGAAATGTTGTCTGGAAGACAAGCTGTGGACAAGAACCGGCCTACAGGAGAACACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

314

Amino Acids

34.45

Weight (kDa)

6.44

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 108 - 305 7.5e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 109 - 294 1e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 752
AciI CCGC 3 cut(s) 342, 812, 846
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 2 cut(s) 406, 625
AfiI CCNNNNNNNGG 1 cut(s) 564
AgsI TTSAA 4 cut(s) 15, 228, 290, 584
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AleI CACNNNNGTG 1 cut(s) 592
AluBI AGCT 6 cut(s) 72, 392, 496, 520, 907, 941
AluI AGCT 6 cut(s) 72, 392, 496, 520, 907, 941
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 3 cut(s) 220, 452, 784
AlwNI CAGNNNCTG 1 cut(s) 36
AoxI GGCC 2 cut(s) 828, 922
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 597, 755
AsuHPI GGTGA 3 cut(s) 257, 347, 776
AvaII GGWCC 2 cut(s) 597, 755
BalI TGGCCA 1 cut(s) 830
BanII GRGCYC 2 cut(s) 30, 74
BbsI GAAGAC 3 cut(s) 216, 252, 906
Bbv12I GWGCWC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 35, 325, 746
BciT130I CCWGG 1 cut(s) 452
BcoDI GTCTC 3 cut(s) 220, 452, 784
BfaI CTAG 2 cut(s) 105, 638
BfmI CTRYAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 752
BisI GCNGC 2 cut(s) 393, 813
BlsI GCNGC 2 cut(s) 394, 814
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 2 cut(s) 597, 755
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 597, 755
BmiI GGNNCC 2 cut(s) 599, 816
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 3 cut(s) 216, 252, 906
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 451, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 2 cut(s) 557, 920
Bse1I ACTGG 2 cut(s) 412, 838
Bse3DI GCAATG 2 cut(s) 210, 724
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 451, 747
BseGI GGATG 3 cut(s) 544, 555, 757
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMI GCAATG 2 cut(s) 210, 724
BseMII CTCAG 5 cut(s) 43, 105, 231, 621, 810
BseNI ACTGG 2 cut(s) 412, 838
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 830, 924
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 558, 921
BslFI GGGAC 2 cut(s) 583, 811
BslI CCNNNNNNNGG 1 cut(s) 564
BsmAI GTCTC 3 cut(s) 220, 452, 784
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 2 cut(s) 583, 811
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 2 cut(s) 830, 924
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 30, 74
Bsp143I GATC 1 cut(s) 669
BspACI CCGC 3 cut(s) 342, 812, 846
BspANI GGCC 2 cut(s) 830, 924
BspCNI CTCAG 5 cut(s) 42, 106, 230, 622, 811
BspLI GGNNCC 2 cut(s) 599, 816
BspMI ACCTGC 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 210, 724
BsrFI RCCGGY 2 cut(s) 557, 920
BsrI ACTGG 2 cut(s) 412, 838
BssAI RCCGGY 2 cut(s) 557, 920
BssECI CCNNGG 2 cut(s) 451, 747
BssMI GATC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 326, 591, 653
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 6 cut(s) 29, 114, 217, 630, 819, 942
BstF5I GGATG 3 cut(s) 544, 555, 757
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 3 cut(s) 220, 452, 784
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 2 cut(s) 389, 719
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 926
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 3 cut(s) 216, 252, 906
BstXI CCANNNNNNTGG 1 cut(s) 594
BsuRI GGCC 2 cut(s) 830, 924
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 3 cut(s) 544, 555, 757
BtsIMutI CAGTG 4 cut(s) 225, 587, 658, 831
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 1 cut(s) 715
CaiI CAGNNNCTG 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 557, 920
Cfr13I GGNCC 2 cut(s) 597, 755
Csp6I GTAC 2 cut(s) 405, 624
CviAII CATG 2 cut(s) 401, 793
CviQI GTAC 2 cut(s) 405, 624
DdeI CTNAG 6 cut(s) 29, 114, 217, 630, 819, 942
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
DraI TTTAAA 1 cut(s) 685
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 2 cut(s) 30, 74
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 597, 755
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 30, 74
ErhI CCWWGG 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 2 cut(s) 404, 796
FaqI GGGAC 2 cut(s) 583, 811
FatI CATG 2 cut(s) 400, 792
FauNDI CATATG 2 cut(s) 97, 606
Fnu4HI GCNGC 2 cut(s) 393, 813
FokI GGATG 3 cut(s) 551, 562, 764
FriOI GRGCYC 2 cut(s) 30, 74
Fsp4HI GCNGC 2 cut(s) 393, 813
FspBI CTAG 2 cut(s) 105, 638
GluI GCNGC 2 cut(s) 393, 813
GsaI CCCAGC 1 cut(s) 370
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 830, 924
HapII CCGG 2 cut(s) 558, 921
Hin1II CATG 2 cut(s) 404, 796
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 3 cut(s) 11, 118, 707
HpaII CCGG 2 cut(s) 558, 921
HphI GGTGA 3 cut(s) 257, 347, 776
Hpy166II GTNNAC 2 cut(s) 471, 912
Hpy188I TCNGA 3 cut(s) 175, 500, 733
Hpy188III TCNNGA 6 cut(s) 189, 253, 320, 677, 818, 896
Hpy8I GTNNAC 2 cut(s) 471, 912
HpyAV CCTTC 3 cut(s) 332, 437, 611
HpyCH4III ACNGT 3 cut(s) 326, 591, 653
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 3 cut(s) 80, 383, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 719
HpyF3I CTNAG 6 cut(s) 29, 114, 217, 630, 819, 942
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 2 cut(s) 404, 796
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 2 cut(s) 501, 820
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 105, 638
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 2 cut(s) 44, 455
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 7 cut(s) 216, 252, 271, 439, 622, 638, 911
MhlI GDGCHC 2 cut(s) 30, 74
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 2 cut(s) 63, 192
MluNI TGGCCA 1 cut(s) 830
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 3 cut(s) 288, 523, 684
MnlI CCTC 7 cut(s) 135, 235, 243, 423, 540, 625, 652
Mox20I TGGCCA 1 cut(s) 830
Mph1103I ATGCAT 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 278
MscI TGGCCA 1 cut(s) 830
MseI TTAA 6 cut(s) 360, 386, 435, 684, 693, 842
MslI CAYNNNNRTG 2 cut(s) 592, 654
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 2 cut(s) 558, 921
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 389, 719
NdeI CATATG 2 cut(s) 97, 606
NdeII GATC 1 cut(s) 669
NlaIII CATG 2 cut(s) 404, 796
NlaIV GGNNCC 2 cut(s) 599, 816
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 385
OliI CACNNNNGTG 1 cut(s) 592
PaqCI CACCTGC 1 cut(s) 752
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 11, 707
PkrI GCNGC 2 cut(s) 394, 814
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 599, 816
PspPI GGNCC 2 cut(s) 597, 755
PstNI CAGNNNCTG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 406, 625
RsaNI GTAC 2 cut(s) 405, 624
RseI CAYNNNNRTG 2 cut(s) 592, 654
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 6 cut(s) 360, 386, 435, 684, 693, 842
SatI GCNGC 2 cut(s) 393, 813
Sau3AI GATC 1 cut(s) 669
Sau96I GGNCC 2 cut(s) 597, 755
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 2 cut(s) 30, 74
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 926
SinI GGWCC 2 cut(s) 597, 755
SmiMI CAYNNNNRTG 2 cut(s) 592, 654
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 63, 192
SsiI CCGC 3 cut(s) 342, 812, 846
SspMI CTAG 2 cut(s) 105, 638
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 3 cut(s) 326, 591, 653
TaiI ACGT 1 cut(s) 780
TaqI TCGA 2 cut(s) 235, 884
TasI AATT 2 cut(s) 63, 192
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 2 cut(s) 11, 707
Tru1I TTAA 6 cut(s) 360, 386, 435, 684, 693, 842
Tru9I TTAA 6 cut(s) 360, 386, 435, 684, 693, 842
TscAI CASTG 4 cut(s) 225, 594, 658, 838
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 84, 126, 151, 287, 593, 623
TspRI CASTG 4 cut(s) 225, 594, 658, 838
VpaK11BI GGWCC 2 cut(s) 597, 755
XapI RAATTY 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 105, 638
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.