Rmu_sc0008470.1_g000015
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008470.1
OG0000305
Physical Location & Seq
Reverse (-)
78923 .. 80574
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008470.1_g000015.1.cds

Sequence Viewer

Length: 1008 bp
atggcgacctggaacttccatcctgataatatggtgggcgaaggtggttttggttctgttttcaaggggtgggttgatgactcatcagcagctgccaaccctggtaagggcatgttgattgctgtgaagaggattaacaaagaaggtttcttgggtcacgagcaatggttggctgaaatttactacctaggaaggctgcgtcatccaaatcttgtgaaattgttgggttattgctttgaagatggtcatcggcttctggtgtttgaatttatgtctcgtggcggcttggataatcatatatttggaagggattcttgtcttcaaccactttcatggaacctgcgtatgaagatttcccttgaggctgctaatgttctagcatttcttcacaatggtgaggaaacagtagtccatcgggacattacaagttctaatatcctgttggattcaacttacaatgccaaactcgctgactttggtttagcaaaggatggacccacaggtgataaaagccatgtttcaacagcagtgatggggacacatgggtatgctgctcctgagtatattgctacaggtcatttaactgccaaatgtgatgtatatgggtttggagttgtgatgctcgaaatgctgtctggaagacgaagtctggaccaaagcctgccaactgtgcaacagaatttagtcgactgggccaaaccttacttcgccagcaaacgcggagttctcaaagttttttatcctcgtttaaaaggccagtactctgtggctggagctcttaaagcagctaatcttgcaaaacaatgcttatcagaagaacctgagtttaggccaaacatgactgaggtggtaaaagcattggagcagcttcaggaacctgaagacatgaagggtttgaagattcctcaaaataagccttgccagagtcctcgtgccaattcaagccatcgcaggagaagcacaagttggatcagcttcatgccatctgcttcccgcagctatacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

37.23

Weight (kDa)

8.84

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 687
AccII CGCG 1 cut(s) 720
AciI CCGC 3 cut(s) 282, 720, 994
AclWI GGATC 1 cut(s) 977
AcsI RAATTY 3 cut(s) 177, 266, 679
AcuI CTGAAG 2 cut(s) 854, 900
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 2 cut(s) 106, 107
AgsI TTSAA 8 cut(s) 64, 239, 266, 323, 450, 522, 898, 942
AjnI CCWGG 2 cut(s) 8, 100
AjuI GAANNNNNNNTTGG 6 cut(s) 33, 65, 689, 721, 949, 981
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 6 cut(s) 92, 776, 788, 868, 975, 999
AluI AGCT 6 cut(s) 92, 776, 788, 868, 975, 999
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 977
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 3 cut(s) 693, 754, 830
ApeKI GCWGC 8 cut(s) 89, 92, 196, 365, 551, 785, 865, 996
ApoI RAATTY 3 cut(s) 177, 266, 679
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 187
AspS9I GGNCC 3 cut(s) 494, 652, 693
AsuHPI GGTGA 2 cut(s) 407, 515
AvaII GGWCC 2 cut(s) 494, 652
AvrII CCTAGG 1 cut(s) 187
BanII GRGCYC 1 cut(s) 778
BauI CACGAG 3 cut(s) 158, 276, 930
BbsI GAAGAC 3 cut(s) 311, 646, 888
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 7 cut(s) 79, 101, 183, 352, 538, 797, 877
BccI CCATC 7 cut(s) 27, 236, 420, 485, 526, 954, 991
BciT130I CCWGG 2 cut(s) 10, 102
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 188, 377
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 552, 786, 866, 997
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 9 cut(s) 91, 94, 198, 284, 367, 553, 787, 867, 998
BmcAI AGTACT 1 cut(s) 761
Bme1390I CCNGG 2 cut(s) 10, 102
Bme18I GGWCC 2 cut(s) 494, 652
BmgT120I GGNCC 3 cut(s) 494, 652, 693
BmiI GGNNCC 3 cut(s) 338, 496, 876
BmrFI CCNGG 2 cut(s) 10, 102
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 609
BmuI ACTGGG 1 cut(s) 700
BpiI GAAGAC 3 cut(s) 311, 646, 888
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 100, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 107
Bse1I ACTGG 2 cut(s) 695, 757
Bse3DI GCAATG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 2 cut(s) 10, 102
BseDI CCNNGG 2 cut(s) 100, 187
BseGI GGATG 3 cut(s) 19, 202, 496
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 106, 107
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 549, 813, 834
BseNI ACTGG 2 cut(s) 695, 757
BseXI GCAGC 7 cut(s) 79, 101, 183, 352, 538, 797, 877
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 3 cut(s) 695, 756, 832
BsiHKAI GWGCWC 1 cut(s) 778
BslFI GGGAC 2 cut(s) 431, 550
BslI CCNNNNNNNGG 2 cut(s) 106, 107
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 431, 550
BsnI GGCC 3 cut(s) 695, 756, 832
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 1 cut(s) 969
BspACI CCGC 3 cut(s) 282, 720, 994
BspANI GGCC 3 cut(s) 695, 756, 832
BspCNI CTCAG 3 cut(s) 550, 814, 835
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 3 cut(s) 338, 496, 876
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 2 cut(s) 695, 757
BssECI CCNNGG 2 cut(s) 100, 187
BssMI GATC 1 cut(s) 969
BssSI CACGAG 3 cut(s) 158, 276, 930
BssT1I CCWWGG 1 cut(s) 187
Bst2BI CACGAG 3 cut(s) 158, 276, 930
Bst2UI CCWGG 2 cut(s) 10, 102
Bst4CI ACNGT 2 cut(s) 406, 670
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 662, 712
BstDEI CTNAG 3 cut(s) 558, 822, 843
BstF5I GGATG 3 cut(s) 19, 202, 496
BstFNI CGCG 1 cut(s) 720
BstKTI GATC 1 cut(s) 972
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 969
BstMWI GCNNNNNNNGC 6 cut(s) 467, 628, 670, 782, 794, 957
BstNI CCWGG 2 cut(s) 10, 102
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 8, 100
BstSFI CTRYAG 1 cut(s) 570
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 7 cut(s) 79, 101, 183, 352, 538, 797, 877
BstV2I GAAGAC 3 cut(s) 311, 646, 888
BstXI CCANNNNNNTGG 1 cut(s) 333
BsuRI GGCC 3 cut(s) 695, 756, 832
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 3 cut(s) 19, 202, 496
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 662, 712
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 494, 652, 693
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 760
CviAII CATG 7 cut(s) 112, 333, 515, 542, 838, 886, 979
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 3 cut(s) 558, 822, 843
DpnI GATC 1 cut(s) 971
DpnII GATC 1 cut(s) 969
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 2 cut(s) 494, 652
Eco53kI GAGCTC 1 cut(s) 776
Eco57I CTGAAG 2 cut(s) 854, 900
EcoICRI GAGCTC 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 8, 100
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 7 cut(s) 115, 336, 518, 545, 841, 889, 982
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 2 cut(s) 431, 550
FatI CATG 7 cut(s) 111, 332, 514, 541, 837, 885, 978
FauI CCCGC 1 cut(s) 1001
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 552, 786, 866, 997
FokI GGATG 3 cut(s) 6, 189, 503
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 552, 786, 866, 997
FspBI CTAG 2 cut(s) 188, 377
GluI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 552, 786, 866, 997
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 3 cut(s) 695, 756, 832
HgaI GACGC 1 cut(s) 188
Hin1II CATG 7 cut(s) 115, 336, 518, 545, 841, 889, 982
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 80, 311, 446, 901, 925
HphI GGTGA 2 cut(s) 407, 515
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 1 cut(s) 814
Hpy188III TCNNGA 7 cut(s) 23, 158, 416, 557, 636, 650, 872
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 5 cut(s) 35, 137, 186, 300, 883
HpyCH4III ACNGT 2 cut(s) 406, 670
HpyCH4V TGCA 2 cut(s) 673, 797
HpyF10VI GCNNNNNNNGC 6 cut(s) 467, 628, 670, 782, 794, 957
HpyF3I CTNAG 3 cut(s) 558, 822, 843
Hsp92II CATG 7 cut(s) 115, 336, 518, 545, 841, 889, 982
Kzo9I GATC 1 cut(s) 969
LmnI GCTCC 3 cut(s) 559, 773, 862
Lsp1109I GCAGC 7 cut(s) 79, 101, 183, 352, 538, 797, 877
LweI GCATC 1 cut(s) 609
MaeI CTAG 2 cut(s) 188, 377
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 971
MboI GATC 1 cut(s) 969
MboII GAAGA 9 cut(s) 139, 251, 311, 361, 377, 651, 827, 893, 910
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 5 cut(s) 177, 218, 266, 679, 937
MlyI GAGTC 2 cut(s) 74, 934
MmeI TCCRAC 2 cut(s) 423, 947
MnlI CCTC 7 cut(s) 123, 355, 391, 753, 838, 915, 939
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 4 cut(s) 135, 581, 749, 780
MslI CAYNNNNRTG 3 cut(s) 331, 393, 546
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 10, 102
MvaI CCWGG 2 cut(s) 10, 102
MvnI CGCG 1 cut(s) 720
MwoI GCNNNNNNNGC 6 cut(s) 467, 628, 670, 782, 794, 957
NdeII GATC 1 cut(s) 969
NlaIII CATG 7 cut(s) 115, 336, 518, 545, 841, 889, 982
NlaIV GGNNCC 3 cut(s) 338, 496, 876
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 311, 446, 901
PflFI GACNNNGTC 1 cut(s) 645
PkrI GCNGC 9 cut(s) 91, 94, 198, 284, 367, 553, 787, 867, 998
PleI GAGTC 2 cut(s) 74, 933
PpsI GAGTC 2 cut(s) 74, 933
Psp124BI GAGCTC 1 cut(s) 778
Psp6I CCWGG 2 cut(s) 8, 100
PspGI CCWGG 2 cut(s) 8, 100
PspN4I GGNNCC 3 cut(s) 338, 496, 876
PspPI GGNCC 3 cut(s) 494, 652, 693
PstNI CAGNNNCTG 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 645
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 3 cut(s) 331, 393, 546
SacI GAGCTC 1 cut(s) 778
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 4 cut(s) 135, 581, 749, 780
SatI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 552, 786, 866, 997
Sau3AI GATC 1 cut(s) 969
Sau96I GGNCC 3 cut(s) 494, 652, 693
ScaI AGTACT 1 cut(s) 761
SchI GAGTC 2 cut(s) 74, 934
ScrFI CCNGG 2 cut(s) 10, 102
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 1 cut(s) 609
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 2 cut(s) 494, 652
SmiMI CAYNNNNRTG 3 cut(s) 331, 393, 546
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 5 cut(s) 177, 218, 266, 679, 937
SsiI CCGC 3 cut(s) 282, 720, 994
SspMI CTAG 2 cut(s) 188, 377
SstI GAGCTC 1 cut(s) 778
StyD4I CCNGG 2 cut(s) 8, 100
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 406, 670
TaqI TCGA 2 cut(s) 624, 687
TasI AATT 5 cut(s) 177, 218, 266, 679, 937
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 3 cut(s) 311, 446, 901
Tru1I TTAA 4 cut(s) 135, 581, 749, 780
Tru9I TTAA 4 cut(s) 135, 581, 749, 780
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 8 cut(s) 89, 92, 196, 365, 551, 785, 865, 996
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 321, 362, 902, 967
TspRI CASTG 1 cut(s) 534
Tth111I GACNNNGTC 1 cut(s) 645
VpaK11BI GGWCC 2 cut(s) 494, 652
XapI RAATTY 3 cut(s) 177, 266, 679
XceI RCATGY 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 2 cut(s) 188, 377
ZrmI AGTACT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.