Rroxscaffold_4G00289410
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000305
Physical Location & Seq
Reverse (-)
10039045 .. 10041012
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289410.1

Sequence Viewer

Length: 804 bp
ATGTCTTCCAACGTGATGAACTTCTTGTTTAATGAACTGAAAACAGCCACAAGGAACTTTCGTCTTGACAGTATGATGGGTGAAGGCGGATTTGGTTGTGTTTTTAAGGGCTGGGTTGATGAGAATGCATTAACAGCTGCCAAGCCTGGTGCTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAGGGTCTCCAGGGTCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTCCGACACCCAAATCTTGTGAAGCTGATTGGTTATTGCTTGGAGGATGACCACCGGCTTCTGGTATTTAGGATGACTAACCGTTATTGGAACCGGGGCTTTTACTTTCAACCACTGTCGTGGTCCCTTCATATGAAGATTGCCCTTGGTACTGCTGAGGGTCTAGCATTTCTTCACAGTGATGAGGCAAAAGTGATCTATCAGGACTTTAAAACTTTTAATATCCTGTTGGATTCAGCCTGCAATGCCAAACTCTCTGATTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAAAAGCCACGTCTCAACAATGGTCATGGGGACATATAGGTATGCGGCTCCTGAGTATATGGCCACAGAAAACACAGTTCTCCAAGTTCTTGATCCTCGTATTGATGGGCAGTACTCTGTGGCTGCAGCTCTTAAAGCAGTTAACCTTGCAATTCGATGCTTATCAACAGAACCCAAGTTTAGGCCAATCATGCATGAATATGTGGTAAAAGCATTAGAGCAGCTTCAGGAACCTGGGAGACATGGAGGGTCCGGGACCCTCTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.88

Weight (kDa)

8.27

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 22 - 201 6.5e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 22 - 202 2e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AciI CCGC 2 cut(s) 87, 578
AclWI GGATC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 2 cut(s) 391, 647
AfiI CCNNNNNNNGG 3 cut(s) 152, 301, 714
AgsI TTSAA 1 cut(s) 350
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 3 cut(s) 145, 195, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AleI CACNNNNGTG 1 cut(s) 358
AluBI AGCT 5 cut(s) 137, 241, 265, 662, 757
AluI AGCT 5 cut(s) 137, 241, 265, 662, 757
Alw26I GTCTC 3 cut(s) 197, 550, 766
AlwI GGATC 1 cut(s) 620
AoxI GGCC 2 cut(s) 594, 716
ApeKI GCWGC 4 cut(s) 137, 656, 659, 754
AspS9I GGNCC 4 cut(s) 363, 521, 783, 789
AsuC2I CCSGG 2 cut(s) 335, 787
AsuHPI GGTGA 2 cut(s) 92, 542
AvaII GGWCC 4 cut(s) 363, 521, 783, 789
BalI TGGCCA 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 124, 643, 671, 766
BccI CCATC 3 cut(s) 70, 512, 632
BciT130I CCWGG 3 cut(s) 147, 197, 768
BcnI CCSGG 2 cut(s) 335, 787
BcoDI GTCTC 3 cut(s) 197, 550, 766
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 5 cut(s) 138, 579, 657, 660, 755
BlsI GCNGC 5 cut(s) 139, 580, 658, 661, 756
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 5 cut(s) 147, 197, 335, 768, 787
Bme18I GGWCC 4 cut(s) 363, 521, 783, 789
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 4 cut(s) 363, 521, 783, 789
BmiI GGNNCC 7 cut(s) 332, 365, 582, 765, 784, 790, 791
BmrFI CCNGG 5 cut(s) 147, 197, 335, 768, 787
BmsI GCATC 1 cut(s) 680
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 335, 787
BsaBI GATNNNNATC 1 cut(s) 694
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 5 cut(s) 196, 334, 385, 513, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 301, 714
Bse118I RCCGGY 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 694
BseBI CCWGG 3 cut(s) 147, 197, 768
BseDI CCNNGG 5 cut(s) 196, 334, 385, 513, 767
BseGI GGATG 3 cut(s) 292, 318, 523
BseJI GATNNNNATC 1 cut(s) 694
BseLI CCNNNNNNNGG 3 cut(s) 152, 301, 714
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 387, 576
BseXI GCAGC 4 cut(s) 124, 643, 671, 766
BseYI CCCAGC 1 cut(s) 111
BshFI GGCC 2 cut(s) 596, 718
BsiSI CCGG 3 cut(s) 295, 334, 786
BslFI GGGAC 2 cut(s) 349, 577
BslI CCNNNNNNNGG 3 cut(s) 152, 301, 714
BsmAI GTCTC 3 cut(s) 197, 550, 766
BsmBI CGTCTC 1 cut(s) 550
BsmFI GGGAC 2 cut(s) 349, 577
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 596, 718
Bso31I GGTCTC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 435, 625
BspACI CCGC 2 cut(s) 87, 578
BspANI GGCC 2 cut(s) 596, 718
BspCNI CTCAG 2 cut(s) 388, 577
BspLI GGNNCC 7 cut(s) 332, 365, 582, 765, 784, 790, 791
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 5 cut(s) 196, 334, 385, 513, 767
BssMI GATC 2 cut(s) 435, 625
BssT1I CCWWGG 2 cut(s) 385, 513
Bst2UI CCWGG 3 cut(s) 147, 197, 768
Bst4CI ACNGT 5 cut(s) 71, 323, 357, 419, 610
Bst6I CTCTTC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 396, 585
BstF5I GGATG 3 cut(s) 292, 318, 523
BstKTI GATC 2 cut(s) 438, 628
BstMAI GTCTC 3 cut(s) 197, 550, 766
BstMBI GATC 2 cut(s) 435, 625
BstMWI GCNNNNNNNGC 4 cut(s) 134, 485, 668, 724
BstNI CCWGG 3 cut(s) 147, 197, 768
BstSCI CCNGG 5 cut(s) 145, 195, 333, 766, 785
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 4 cut(s) 124, 643, 671, 766
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 2 cut(s) 596, 718
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 3 cut(s) 292, 318, 523
BtsIMutI CAGTG 2 cut(s) 353, 424
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 4 cut(s) 363, 521, 783, 789
Csp6I GTAC 2 cut(s) 390, 646
CviAII CATG 4 cut(s) 559, 724, 728, 776
CviQI GTAC 2 cut(s) 390, 646
DdeI CTNAG 2 cut(s) 396, 585
DpnI GATC 2 cut(s) 437, 627
DpnII GATC 2 cut(s) 435, 625
DraI TTTAAA 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 385, 513
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 4 cut(s) 363, 521, 783, 789
Eco57I CTGAAG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 789
EcoRII CCWGG 3 cut(s) 145, 195, 766
EcoT14I CCWWGG 2 cut(s) 385, 513
EcoT22I ATGCAT 2 cut(s) 130, 729
ErhI CCWWGG 2 cut(s) 385, 513
Esp3I CGTCTC 1 cut(s) 550
FaeI CATG 4 cut(s) 562, 727, 731, 779
FaqI GGGAC 2 cut(s) 349, 577
FatI CATG 4 cut(s) 558, 723, 727, 775
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 138, 579, 657, 660, 755
FokI GGATG 3 cut(s) 299, 325, 530
Fsp4HI GCNGC 5 cut(s) 138, 579, 657, 660, 755
FspBI CTAG 1 cut(s) 404
GluI GCNGC 5 cut(s) 138, 579, 657, 660, 755
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 596, 718
HapII CCGG 3 cut(s) 295, 334, 786
Hin1II CATG 4 cut(s) 562, 727, 731, 779
HincII GTYRAC 2 cut(s) 216, 676
HindII GTYRAC 2 cut(s) 216, 676
HinfI GANTC 1 cut(s) 473
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 3 cut(s) 295, 334, 786
HphI GGTGA 2 cut(s) 92, 542
Hpy166II GTNNAC 2 cut(s) 216, 676
Hpy188I TCNGA 2 cut(s) 245, 499
Hpy188III TCNNGA 5 cut(s) 65, 443, 584, 623, 761
Hpy8I GTNNAC 2 cut(s) 216, 676
HpyAV CCTTC 2 cut(s) 77, 377
HpyCH4III ACNGT 5 cut(s) 71, 323, 357, 419, 610
HpyCH4IV ACGT 2 cut(s) 12, 543
HpyCH4V TGCA 5 cut(s) 128, 483, 659, 683, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 485, 668, 724
HpyF3I CTNAG 2 cut(s) 396, 585
HpySE526I ACGT 2 cut(s) 12, 543
Hsp92II CATG 4 cut(s) 562, 727, 731, 779
KflI GGGWCCC 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 2 cut(s) 435, 625
LmnI GCTCC 2 cut(s) 246, 586
Lsp1109I GCAGC 4 cut(s) 124, 643, 671, 766
LweI GCATC 1 cut(s) 680
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 12, 543
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 437, 627
MboI GATC 2 cut(s) 435, 625
MboII GAAGA 3 cut(s) 184, 388, 404
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 596
MmeI TCCRAC 3 cut(s) 33, 268, 450
MnlI CCTC 8 cut(s) 168, 181, 277, 391, 418, 639, 773, 803
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 2 cut(s) 130, 729
MscI TGGCCA 1 cut(s) 596
MseI TTAA 8 cut(s) 30, 105, 131, 180, 450, 459, 666, 675
MslI CAYNNNNRTG 3 cut(s) 358, 420, 732
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 295, 334, 786
MspR9I CCNGG 5 cut(s) 147, 197, 335, 768, 787
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 3 cut(s) 147, 197, 768
MwoI GCNNNNNNNGC 4 cut(s) 134, 485, 668, 724
NciI CCSGG 2 cut(s) 335, 787
NdeI CATATG 1 cut(s) 372
NdeII GATC 2 cut(s) 435, 625
NlaIII CATG 4 cut(s) 562, 727, 731, 779
NlaIV GGNNCC 7 cut(s) 332, 365, 582, 765, 784, 790, 791
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 2 cut(s) 130, 729
OliI CACNNNNGTG 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 518
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 785
PkrI GCNGC 5 cut(s) 139, 580, 658, 661, 756
PpuMI RGGWCCY 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 789
Psp6I CCWGG 3 cut(s) 145, 195, 766
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 145, 195, 766
PspN4I GGNNCC 7 cut(s) 332, 365, 582, 765, 784, 790, 791
PspPI GGNCC 4 cut(s) 363, 521, 783, 789
PspPPI RGGWCCY 1 cut(s) 789
PstI CTGCAG 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 391, 647
RsaNI GTAC 2 cut(s) 390, 646
RseI CAYNNNNRTG 3 cut(s) 358, 420, 732
SaqAI TTAA 8 cut(s) 30, 105, 131, 180, 450, 459, 666, 675
SatI GCNGC 5 cut(s) 138, 579, 657, 660, 755
Sau3AI GATC 2 cut(s) 435, 625
Sau96I GGNCC 4 cut(s) 363, 521, 783, 789
ScaI AGTACT 1 cut(s) 647
ScrFI CCNGG 5 cut(s) 147, 197, 335, 768, 787
SfaNI GCATC 1 cut(s) 680
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 4 cut(s) 363, 521, 783, 789
SmiMI CAYNNNNRTG 3 cut(s) 358, 420, 732
Sse9I AATT 1 cut(s) 684
SsiI CCGC 2 cut(s) 87, 578
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 5 cut(s) 145, 195, 333, 766, 785
StyI CCWWGG 2 cut(s) 385, 513
TaaI ACNGT 5 cut(s) 71, 323, 357, 419, 610
TaiI ACGT 2 cut(s) 15, 546
TaqI TCGA 1 cut(s) 688
TasI AATT 1 cut(s) 684
TatI WGTACW 1 cut(s) 645
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 8 cut(s) 30, 105, 131, 180, 450, 459, 666, 675
Tru9I TTAA 8 cut(s) 30, 105, 131, 180, 450, 459, 666, 675
TscAI CASTG 2 cut(s) 360, 424
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 4 cut(s) 137, 656, 659, 754
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 32, 48, 359, 389, 744
TspRI CASTG 2 cut(s) 360, 424
VpaK11BI GGWCC 4 cut(s) 363, 521, 783, 789
XspI CTAG 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 647
Zsp2I ATGCAT 2 cut(s) 130, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.