RchiOBHm_Chr1g0367261
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000305
Physical Location & Seq
Forward (+)
57595311 .. 57595968
658 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59173

Sequence Viewer

Length: 384 bp
ATGCTCGAAATGATTTCCGGAAAACGAGTTTTTGACCGGAACCGGCCACCCGGGGAACAGAACTTAGTTGAATGGGCCAAACCTTACCTTTTCAGCAAACACAGAGTCCTCCAAATTTTTGATCATCATATCAAAGGCCAGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTAGTAAAAATATTGGAGAAGCTTCAGGAATACAGTGATATGGATGGCTTGGGGATCTCTCAAAATAAACGACGCCAAATCCGCATGTCAGTTCAATCAATGGTCCCAAATACTGCAGGAGAAGTAGCATTGGAACCAGCAATTCAACATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.58

Weight (kDa)

9.77

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 194, 290
AcoI YGGCCR 2 cut(s) 44, 150
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 3 cut(s) 71, 323, 374
AluBI AGCT 3 cut(s) 158, 208, 250
AluI AGCT 3 cut(s) 158, 208, 250
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 2 cut(s) 194, 290
Ama87I CYCGRG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 5 cut(s) 44, 75, 136, 150, 212
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspS9I GGNCC 2 cut(s) 75, 331
AsuC2I CCSGG 2 cut(s) 51, 52
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 1 cut(s) 266
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 51, 52
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 51, 52
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 75, 331
BmiI GGNNCC 3 cut(s) 41, 333, 363
BmrFI CCNGG 2 cut(s) 51, 52
Bpu10I CCTNAGC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 51, 52
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 50, 51
BsaWI WCCGGW 2 cut(s) 17, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 50, 51
BseGI GGATG 2 cut(s) 277, 376
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 5 cut(s) 46, 77, 138, 152, 214
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 18, 37, 43, 51
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 5 cut(s) 46, 77, 138, 152, 214
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 121, 199, 282
BspACI CCGC 1 cut(s) 310
BspANI GGCC 5 cut(s) 46, 77, 138, 152, 214
BspEI TCCGGA 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 41, 333, 363
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 2 cut(s) 194, 290
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 50, 51
BssMI GATC 3 cut(s) 121, 199, 282
BssNI GRCGYC 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 64, 209
BstF5I GGATG 2 cut(s) 277, 376
BstKTI GATC 3 cut(s) 124, 202, 285
BstMBI GATC 3 cut(s) 121, 199, 282
BstMWI GCNNNNNNNGC 2 cut(s) 164, 309
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 49, 50
BstSFI CTRYAG 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 199, 282
BstYI RGATCY 2 cut(s) 199, 282
BsuRI GGCC 5 cut(s) 46, 77, 138, 152, 214
BtsCI GGATG 2 cut(s) 277, 376
BtsIMutI CAGTG 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 75, 331
Cfr9I CCCGGG 1 cut(s) 50
CseI GACGC 1 cut(s) 309
CviAII CATG 2 cut(s) 220, 313
CviJI RGCY 9 cut(s) 46, 77, 138, 152, 158, 208, 214, 250, 276
CviKI_1 RGCY 9 cut(s) 46, 77, 138, 152, 158, 208, 214, 250, 276
DdeI CTNAG 2 cut(s) 64, 209
DpnI GATC 3 cut(s) 123, 201, 284
DpnII GATC 3 cut(s) 121, 199, 282
EaeI YGGCCR 2 cut(s) 44, 150
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 223, 316
FaiI YATR 4 cut(s) 129, 221, 269, 314
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 219, 312
FbaI TGATCA 1 cut(s) 121
FokI GGATG 2 cut(s) 284, 363
FriOI GRGCYC 1 cut(s) 160
HaeIII GGCC 5 cut(s) 46, 77, 138, 152, 214
HapII CCGG 4 cut(s) 18, 37, 43, 51
HgaI GACGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 2 cut(s) 223, 316
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 206, 248
HinfI GANTC 1 cut(s) 105
HpaII CCGG 4 cut(s) 18, 37, 43, 51
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 18, 195, 254
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 179, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 309
HpyF3I CTNAG 2 cut(s) 64, 209
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 2 cut(s) 223, 316
Kpn2I TCCGGA 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 199, 282
LpnPI CCDG 9 cut(s) 31, 50, 56, 64, 152, 166, 239, 330, 378
MalI GATC 3 cut(s) 123, 201, 284
MboI GATC 3 cut(s) 121, 199, 282
MflI RGATCY 2 cut(s) 199, 282
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 114, 369
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 152
MroI TCCGGA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 4 cut(s) 18, 37, 43, 51
MspR9I CCNGG 2 cut(s) 51, 52
MwoI GCNNNNNNNGC 2 cut(s) 164, 309
NciI CCSGG 2 cut(s) 51, 52
NdeII GATC 3 cut(s) 121, 199, 282
NlaIII CATG 2 cut(s) 223, 316
NlaIV GGNNCC 3 cut(s) 41, 333, 363
NspI RCATGY 1 cut(s) 316
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 41, 333, 363
PspPI GGNCC 2 cut(s) 75, 331
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 199, 282
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 3 cut(s) 121, 199, 282
Sau96I GGNCC 2 cut(s) 75, 331
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 51, 52
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 85, 90, 160, 177, 210, 252
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 52
Sse9I AATT 2 cut(s) 114, 369
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 240
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 49, 50
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 114, 369
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 236
TspMI CCCGGG 1 cut(s) 50
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 114
XceI RCATGY 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.