Rorug01G0335700
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
45407902 .. 45411072
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0335700.1

Sequence Viewer

Length: 831 bp
ATGAAGTGCCAGAGATTCCTATCGATCCCAATCTTCGCTGTGCTTCTGTTGATGGGTTTCATCTGTTACATCACGGTCTTTATTTTCATCGACGATTGGGTTGGGTTGCAGAGCTCTGCTGGTTATCTGAACGTTCTGATCTTCACTGTCTTGGCCTCTCTTTGCCTCTTCTCTTTCTCTTCTTGTGTTCTCATCGACCCAGGTTACACCCCAGCTTCATATATCCCTGATGTTGAAGATAGTGGAGTCTCTGATCAGGAGCCCAAGAAAAATGTTATACAATCAAGGTGTTGTGACAAGTGTTCAACATACAAGCCTCCTAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGGATGGATCATCACTGTCTGTGGGTCAATAACTGTGTCGGTTATTGGAACTACAAAGCCTTCTTTACGCTAGTCTTATATGCAACAATAGGAAGCTTGTATTCTACAACCATCATTATAACTTGTGCTTTGCAAAAGGACTGGGAATTCAGTGGAAGTGGGAGCCTCAAAGTCTTTTATGTTACATGTGCAGCAACGATGGCTGCCTTGACCTTAACGCTTGGAACTCTTCTAGGATGGCATGTTTACCTCGTCATCCGTAATATGACAACTATAGAGTATTATGAAGCAATACGGACTGCATGGCTGGCTAGGAAATCTGGGCAGAGCTACAGACATCCATACAACCAAAGTGTCTACAAAAACATTACTTCGGTCTTGGGTCCAAATATGCTGAAATGGTTATGGCCTGTAGCAGTAAGTCATCTAAAAGATGGACTTGTCTTCCCTACTCCGCGTGATAATTCGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

276

Amino Acids

31.32

Weight (kDa)

8.79

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 216 5.2e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccI GTMKAC 1 cut(s) 717
AccII CGCG 1 cut(s) 817
AciI CCGC 1 cut(s) 815
AclI AACGTT 1 cut(s) 132
AclWI GGATC 2 cut(s) 19, 375
AcsI RAATTY 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 2 cut(s) 236, 306
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 4 cut(s) 114, 215, 456, 690
AluI AGCT 4 cut(s) 114, 215, 456, 690
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 19, 375
AoxI GGCC 2 cut(s) 153, 767
ApeKI GCWGC 2 cut(s) 551, 563
ApoI RAATTY 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 743
AvrII CCTAGG 1 cut(s) 320
BanII GRGCYC 3 cut(s) 116, 264, 328
BbsI GAAGAC 1 cut(s) 796
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 550, 563
BccI CCATC 6 cut(s) 46, 358, 479, 553, 591, 788
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 4 cut(s) 321, 431, 593, 672
BfmI CTRYAG 4 cut(s) 343, 633, 691, 771
BisI GCNGC 2 cut(s) 552, 564
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 2 cut(s) 553, 565
Bme1390I CCNGG 2 cut(s) 201, 338
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 3 cut(s) 261, 524, 744
BmrFI CCNGG 2 cut(s) 201, 338
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 23
BsaBI GATNNNNATC 2 cut(s) 19, 29
BsaJI CCNNGG 2 cut(s) 199, 320
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 2 cut(s) 19, 29
BseBI CCWGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 199, 320
BseGI GGATG 4 cut(s) 369, 602, 615, 697
BseJI GATNNNNATC 2 cut(s) 19, 29
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 550, 563
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 817
BshFI GGCC 2 cut(s) 155, 769
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 155, 769
Bsp1286I GDGCHC 3 cut(s) 116, 264, 328
Bsp143I GATC 4 cut(s) 24, 138, 253, 367
BspACI CCGC 1 cut(s) 815
BspANI GGCC 2 cut(s) 155, 769
BspDI ATCGAT 1 cut(s) 23
BspFNI CGCG 1 cut(s) 817
BspLI GGNNCC 3 cut(s) 261, 524, 744
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 19, 375
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 199, 320
BssMI GATC 4 cut(s) 24, 138, 253, 367
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 4 cut(s) 76, 148, 377, 395
Bst6I CTCTTC 3 cut(s) 173, 184, 594
BstC8I GCNNGC 1 cut(s) 669
BstF5I GGATG 4 cut(s) 369, 602, 615, 697
BstFNI CGCG 1 cut(s) 817
BstKTI GATC 4 cut(s) 27, 141, 256, 370
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 4 cut(s) 24, 138, 253, 367
BstMWI GCNNNNNNNGC 3 cut(s) 342, 560, 668
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 2 cut(s) 549, 605
BstSCI CCNGG 2 cut(s) 199, 336
BstSFI CTRYAG 4 cut(s) 343, 633, 691, 771
BstUI CGCG 1 cut(s) 817
BstV1I GCAGC 2 cut(s) 550, 563
BstV2I GAAGAC 1 cut(s) 796
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 2 cut(s) 155, 769
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 4 cut(s) 369, 602, 615, 697
BtsIMutI CAGTG 3 cut(s) 144, 373, 517
Cac8I GCNNGC 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 23
CviAII CATG 3 cut(s) 546, 602, 663
DpnI GATC 4 cut(s) 26, 140, 255, 369
DpnII GATC 4 cut(s) 24, 138, 253, 367
Eam1104I CTCTTC 3 cut(s) 173, 184, 594
EarI CTCTTC 3 cut(s) 173, 184, 594
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 3 cut(s) 116, 264, 328
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 3 cut(s) 116, 264, 328
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 3 cut(s) 549, 605, 666
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FatI CATG 3 cut(s) 545, 601, 662
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 2 cut(s) 552, 564
FokI GGATG 4 cut(s) 376, 602, 609, 684
FriOI GRGCYC 3 cut(s) 116, 264, 328
Fsp4HI GCNGC 2 cut(s) 552, 564
FspBI CTAG 4 cut(s) 321, 431, 593, 672
GluI GCNGC 2 cut(s) 552, 564
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 155, 769
HapII CCGG 1 cut(s) 337
Hin1II CATG 3 cut(s) 549, 605, 666
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 2 cut(s) 15, 246
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 607, 718
Hpy188I TCNGA 3 cut(s) 129, 138, 253
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 607, 718
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 342, 430
HpyCH4III ACNGT 4 cut(s) 76, 148, 377, 395
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 6 cut(s) 109, 345, 443, 493, 551, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 342, 560, 668
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 549, 605, 666
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 24, 138, 253, 367
LmnI GCTCC 2 cut(s) 259, 522
Lsp1109I GCAGC 2 cut(s) 550, 563
MaeI CTAG 4 cut(s) 321, 431, 593, 672
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 65, 203, 293, 541
MalI GATC 4 cut(s) 26, 140, 255, 369
MboI GATC 4 cut(s) 24, 138, 253, 367
MboII GAAGA 7 cut(s) 25, 133, 160, 171, 248, 581, 796
MhlI GDGCHC 3 cut(s) 116, 264, 328
MluCI AATT 2 cut(s) 506, 823
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 5 cut(s) 166, 176, 327, 536, 620
MseI TTAA 2 cut(s) 359, 575
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 201, 338
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 817
MwoI GCNNNNNNNGC 3 cut(s) 342, 560, 668
NciI CCSGG 1 cut(s) 338
NdeII GATC 4 cut(s) 24, 138, 253, 367
NlaIII CATG 3 cut(s) 549, 605, 666
NlaIV GGNNCC 3 cut(s) 261, 524, 744
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 2 cut(s) 549, 605
PciI ACATGT 1 cut(s) 545
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 553, 565
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PscI ACATGT 1 cut(s) 545
PsiI TTATAA 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 261, 524, 744
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 359, 575
SatI GCNGC 2 cut(s) 552, 564
Sau3AI GATC 4 cut(s) 24, 138, 253, 367
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 201, 338
SduI GDGCHC 3 cut(s) 116, 264, 328
SfcI CTRYAG 4 cut(s) 343, 633, 691, 771
SinI GGWCC 1 cut(s) 743
Sse9I AATT 2 cut(s) 506, 823
SsiI CCGC 1 cut(s) 815
SspMI CTAG 4 cut(s) 321, 431, 593, 672
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 199, 336
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 76, 148, 377, 395
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 23, 90, 195
TaqII GACCGA 1 cut(s) 724
TasI AATT 2 cut(s) 506, 823
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 359, 575
Tru9I TTAA 2 cut(s) 359, 575
TscAI CASTG 3 cut(s) 151, 380, 517
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 551, 563
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 17, 49, 76, 207, 660
TspGWI ACGGA 2 cut(s) 608, 670
TspRI CASTG 3 cut(s) 151, 380, 517
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 549, 605
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 4 cut(s) 321, 431, 593, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.