Rh1CG319200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
59434244 .. 59435620
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG319200.1

Sequence Viewer

Length: 696 bp
ATGAAGATTGCCCTTGGTGCTGCTAAGGGTCTAGCATTTCTTCACAGTGATGAGGCAAAAGTGATCTATCGGGACTTTAAAACTTCTAATATCCTGTTGGATTCAGCCTACAACGCCAAACTCTCTGACTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAGAAGCCACGTCTCAACAAGGGTCATGGGGACATATGGGTATGCGGCTCCTGAGTATATGGCCACAGGTCATTTAACCGCCAAAAGTGATGTGTATAGTTTTGGGGTTGTTATGCTCGAAATGTTGTCTGGAAGACGTGCTGTGGACAAGAACCGTCCTACAGGGGAACACAGCTTAGTTGAGTGGGCCAAACCTTACCTTGCCAGCAAACGCAAAGTTCTCCAAGTTTTTGACGCTCGTATTGATGGCCAGTACTCTGTGGCTTCAGCTCTTAAAGCAGTTAACCTTGCAATTCGATGCTTATCAACAGAACCCAAGTTTAGGCCAATCATGAATGATGTGGTAAAAGCATTAGAGCAGCTTCAGGAGCCTGAAGACATGGAGGGTCCAGGACCCTCCCAAAATGAACCTCGCCAAAATCTTCATGCCAGTGCAAGTAATGGTCCCCAAAATCGAAGGAGAAGTATGAACGGAACCAGCAATGCAAGAAATGCTTCTCTTCACAGGCCATCTGCTGCACGCGGAAATACATAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

25.19

Weight (kDa)

9.59

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 172 3.2e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 170 2.5e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 146
AccII CGCG 1 cut(s) 684
AciI CCGC 3 cut(s) 206, 240, 684
AcoI YGGCCR 2 cut(s) 222, 409
AcuI CTGAAG 3 cut(s) 411, 509, 555
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 483
AjiI CACGTC 2 cut(s) 172, 299
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 3 cut(s) 336, 431, 523
AluI AGCT 3 cut(s) 336, 431, 523
Alw26I GTCTC 1 cut(s) 178
AoxI GGCC 5 cut(s) 222, 348, 409, 485, 668
ApeKI GCWGC 3 cut(s) 20, 520, 677
Asp700I GAANNNNTTC 1 cut(s) 655
AspS9I GGNCC 5 cut(s) 149, 348, 548, 554, 605
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 4 cut(s) 149, 548, 554, 605
BalI TGGCCA 2 cut(s) 224, 411
BbsI GAAGAC 2 cut(s) 301, 543
BbvI GCAGC 3 cut(s) 7, 532, 664
BccI CCATC 3 cut(s) 140, 401, 679
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 21, 207, 521, 678
BlsI GCNGC 4 cut(s) 22, 208, 522, 679
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 4 cut(s) 149, 548, 554, 605
BmgBI CACGTC 2 cut(s) 172, 299
BmgT120I GGNCC 5 cut(s) 149, 348, 548, 554, 605
BmiI GGNNCC 6 cut(s) 210, 531, 549, 556, 607, 637
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 301, 543
Bpu10I CCTNAGC 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 13, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse1I ACTGG 2 cut(s) 412, 591
Bse3DI GCAATG 1 cut(s) 649
Bse8I GATNNNNATC 1 cut(s) 463
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 13, 141
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 412, 591
BseXI GCAGC 3 cut(s) 7, 532, 664
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 5 cut(s) 224, 350, 411, 487, 670
BslFI GGGAC 3 cut(s) 86, 205, 591
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 3 cut(s) 86, 205, 591
BsnI GGCC 5 cut(s) 224, 350, 411, 487, 670
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 206, 240, 684
BspANI GGCC 5 cut(s) 224, 350, 411, 487, 670
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 684
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 6 cut(s) 210, 531, 549, 556, 607, 637
BspMI ACCTGC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 649
BsrI ACTGG 2 cut(s) 412, 591
BssECI CCNNGG 2 cut(s) 13, 141
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 13, 141
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 47, 317
Bst6I CTCTTC 1 cut(s) 666
BstAPI GCANNNNNTGC 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 367, 682
BstDEI CTNAG 3 cut(s) 24, 213, 337
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 684
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 17, 113, 437, 529, 653
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 7, 532, 664
BstV2I GAAGAC 2 cut(s) 301, 543
BsuRI GGCC 5 cut(s) 224, 350, 411, 487, 670
BtrI CACGTC 2 cut(s) 172, 299
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 52, 598
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 367, 682
CciI TCATGA 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 149, 348, 548, 554, 605
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 415
CviAII CATG 4 cut(s) 187, 493, 541, 587
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 24, 213, 337
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraI TTTAAA 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 222, 409
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 2 cut(s) 13, 141
Eco47I GGWCC 4 cut(s) 149, 548, 554, 605
Eco57I CTGAAG 3 cut(s) 411, 509, 555
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 13, 141
ErhI CCWWGG 2 cut(s) 13, 141
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 4 cut(s) 190, 496, 544, 590
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FaqI GGGAC 3 cut(s) 86, 205, 591
FatI CATG 4 cut(s) 186, 492, 540, 586
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 21, 207, 521, 678
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 4 cut(s) 21, 207, 521, 678
FspBI CTAG 1 cut(s) 32
GluI GCNGC 4 cut(s) 21, 207, 521, 678
HaeIII GGCC 5 cut(s) 224, 350, 411, 487, 670
HgaI GACGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 190, 496, 544, 590
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 1 cut(s) 101
HpaI GTTAAC 1 cut(s) 445
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 307, 445
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 5 cut(s) 71, 212, 291, 493, 527
Hpy8I GTNNAC 2 cut(s) 307, 445
HpyAV CCTTC 1 cut(s) 612
HpyCH4III ACNGT 2 cut(s) 47, 317
HpyCH4IV ACGT 2 cut(s) 171, 298
HpyCH4V TGCA 4 cut(s) 452, 596, 647, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 113, 437, 529, 653
HpyF3I CTNAG 3 cut(s) 24, 213, 337
HpySE526I ACGT 2 cut(s) 171, 298
Hsp92II CATG 4 cut(s) 190, 496, 544, 590
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 214, 529
Lsp1109I GCAGC 3 cut(s) 7, 532, 664
LweI GCATC 1 cut(s) 449
MaeI CTAG 1 cut(s) 32
MaeII ACGT 2 cut(s) 171, 298
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 6 cut(s) 16, 32, 306, 548, 575, 653
MlsI TGGCCA 2 cut(s) 224, 411
MluCI AATT 1 cut(s) 453
MluNI TGGCCA 2 cut(s) 224, 411
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 46, 538, 568, 582
Mox20I TGGCCA 2 cut(s) 224, 411
MroXI GAANNNNTTC 1 cut(s) 655
MscI TGGCCA 2 cut(s) 224, 411
MseI TTAA 4 cut(s) 78, 236, 435, 444
MslI CAYNNNNRTG 2 cut(s) 48, 591
Msp20I TGGCCA 2 cut(s) 224, 411
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 5 cut(s) 17, 113, 437, 529, 653
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 63
NlaIII CATG 4 cut(s) 190, 496, 544, 590
NlaIV GGNNCC 6 cut(s) 210, 531, 549, 556, 607, 637
PagI TCATGA 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 4 cut(s) 22, 208, 522, 679
PpuMI RGGWCCY 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 6 cut(s) 210, 531, 549, 556, 607, 637
PspPI GGNCC 5 cut(s) 149, 348, 548, 554, 605
PspPPI RGGWCCY 1 cut(s) 554
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 48, 591
SaqAI TTAA 4 cut(s) 78, 236, 435, 444
SatI GCNGC 4 cut(s) 21, 207, 521, 678
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 5 cut(s) 149, 348, 548, 554, 605
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 552
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 4 cut(s) 149, 548, 554, 605
SmiMI CAYNNNNRTG 2 cut(s) 48, 591
Sse9I AATT 1 cut(s) 453
SsiI CCGC 3 cut(s) 206, 240, 684
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 2 cut(s) 13, 141
TaaI ACNGT 2 cut(s) 47, 317
TaiI ACGT 2 cut(s) 174, 301
TaqI TCGA 3 cut(s) 279, 457, 616
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 4 cut(s) 78, 236, 435, 444
Tru9I TTAA 4 cut(s) 78, 236, 435, 444
TscAI CASTG 2 cut(s) 52, 598
TseI GCWGC 3 cut(s) 20, 520, 677
TspDTI ATGAA 5 cut(s) 17, 509, 575, 582, 644
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 2 cut(s) 52, 598
VpaK11BI GGWCC 4 cut(s) 149, 548, 554, 605
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.