RchiOBHm_Chr1g0367321
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000305
Physical Location & Seq
Forward (+)
57621747 .. 57623623
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59179

Sequence Viewer

Length: 897 bp
ATGGCTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGGGAGGAATGGTTTAGAGAAATTTACTACCTTGGACAGCTGCGTCACCCAAATCTTGTGAAGTTGATAGGCTATTGTTCAGAGGATAACGAACTGCTTCTTGTGTATGAATTTGTGCCCCATGGCAGTTTGGATAATCATATATTTAGAAGGAGTTCTCACTTTCAACCACTTTCATGGACTTTTCGTATGAAGATTGCCCTTGGTGCTGCGAAGGCTCTAGCATTTCTTCACAATGAAGCAAAAGTTATATATCGTGACTTTAAAGCAGCTAATATTCTGTTGGACTCAACCTACAATGTCAAGCTCTCTGATTTTGGTTTGGCCATGGATGGGCGATTAATTGACAGACACCCAGGTGCCAAAACAAGGGTCATTGGCACATATGGATGTGCAGCTCCCAAGTATATAGAAACAAGGGTCATGGGCACATATGGACATGCAGCTCCTGAGTATATAGCTACAGGTCGTCTAAACACCAAATGTGATGTGTATGGTTTTGGAGCTGTTATGCTCGAATTGTTGTCAGGAAGACGAGTTTTTGACCGAAGCCGGCTACCTGGGGAACAGAAATTAGTTAAATGGGCCAAACCTTACCTTGTCAGCAAACAGAGAGTCCTCCAAATTTTTGATTCTCATATTAAAGGCCAGTTTTCTGTAGCCAGAGCTCTTAAAGCAGTTGACGTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAGGAATCCAGTGACATAGATGGCTTGGGGATCTCTCAAAATAAACGTCGCCAAAATCCACATGTCAGTTTAATCATTGGTCCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

298

Amino Acids

33.87

Weight (kDa)

9.71

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 264 9e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 266 4.6e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 404
AclWI GGATC 2 cut(s) 749, 845
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 3 cut(s) 66, 155, 669
AcuI CTGAAG 1 cut(s) 791
AfiI CCNNNNNNNGG 3 cut(s) 378, 414, 765
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 2 cut(s) 400, 604
AleI CACNNNNGTG 1 cut(s) 402
Alw21I GWGCWC 1 cut(s) 715
AlwI GGATC 2 cut(s) 749, 845
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 369, 630, 691, 767
ApeKI GCWGC 5 cut(s) 85, 254, 314, 440, 488
ApoI RAATTY 3 cut(s) 66, 155, 669
ArsI GACNNNNNNTTYG 6 cut(s) 402, 434, 645, 677, 838, 870
AseI ATTAAT 1 cut(s) 386
Asp700I GAANNNNTTC 2 cut(s) 141, 199
AspS9I GGNCC 2 cut(s) 630, 887
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 887
BaeGI GKGCMC 2 cut(s) 165, 476
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 5 cut(s) 72, 241, 326, 452, 500
BccI CCATC 2 cut(s) 371, 821
BciT130I CCWGG 2 cut(s) 402, 606
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 2 cut(s) 507, 702
BisI GCNGC 5 cut(s) 86, 255, 315, 441, 489
BlsI GCNGC 5 cut(s) 87, 256, 316, 442, 490
Bme1390I CCNGG 2 cut(s) 402, 606
Bme18I GGWCC 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 630, 887
BmiI GGNNCC 2 cut(s) 406, 889
BmrFI CCNGG 2 cut(s) 402, 606
BpiI GAAGAC 1 cut(s) 583
Bpu10I CCTNAGC 1 cut(s) 764
BsaJI CCNNGG 6 cut(s) 76, 166, 247, 372, 400, 605
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 414, 765
Bse118I RCCGGY 1 cut(s) 597
Bse1I ACTGG 2 cut(s) 694, 816
BseBI CCWGG 2 cut(s) 402, 606
BseDI CCNNGG 6 cut(s) 76, 166, 247, 372, 400, 605
BseGI GGATG 2 cut(s) 382, 440
BseLI CCNNNNNNNGG 3 cut(s) 378, 414, 765
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 694, 816
BseSI GKGCMC 2 cut(s) 165, 476
BseXI GCAGC 5 cut(s) 72, 241, 326, 452, 500
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 4 cut(s) 371, 632, 693, 769
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 3 cut(s) 378, 414, 765
BsmFI GGGAC 1 cut(s) 873
BsnI GGCC 4 cut(s) 371, 632, 693, 769
Bsp1286I GDGCHC 3 cut(s) 165, 476, 715
Bsp143I GATC 2 cut(s) 754, 837
Bsp19I CCATGG 2 cut(s) 166, 372
BspANI GGCC 4 cut(s) 371, 632, 693, 769
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 406, 889
BspPI GGATC 2 cut(s) 749, 845
BspT107I GGYRCC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 597
BsrI ACTGG 2 cut(s) 694, 816
BssAI RCCGGY 1 cut(s) 597
BssECI CCNNGG 6 cut(s) 76, 166, 247, 372, 400, 605
BssMI GATC 2 cut(s) 754, 837
BssT1I CCWWGG 4 cut(s) 76, 166, 247, 372
Bst2UI CCWGG 2 cut(s) 402, 606
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 2 cut(s) 495, 764
BstDSI CCRYGG 2 cut(s) 166, 372
BstF5I GGATG 2 cut(s) 382, 440
BstKTI GATC 2 cut(s) 757, 840
BstMBI GATC 2 cut(s) 754, 837
BstMWI GCNNNNNNNGC 3 cut(s) 251, 260, 719
BstNI CCWGG 2 cut(s) 402, 606
BstNSI RCATGY 2 cut(s) 488, 872
BstSCI CCNGG 2 cut(s) 400, 604
BstSFI CTRYAG 2 cut(s) 507, 702
BstSLI GKGCMC 2 cut(s) 165, 476
BstV1I GCAGC 5 cut(s) 72, 241, 326, 452, 500
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 2 cut(s) 754, 837
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 2 cut(s) 754, 837
BsuRI GGCC 4 cut(s) 371, 632, 693, 769
BtgI CCRYGG 2 cut(s) 166, 372
BtsCI GGATG 2 cut(s) 382, 440
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 599
CaiI CAGNNNCTG 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 597
Cfr13I GGNCC 2 cut(s) 630, 887
CseI GACGC 1 cut(s) 77
CviAII CATG 7 cut(s) 167, 222, 373, 469, 485, 775, 869
DdeI CTNAG 2 cut(s) 495, 764
DpnI GATC 2 cut(s) 756, 839
DpnII GATC 2 cut(s) 754, 837
DraI TTTAAA 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 713
Eco130I CCWWGG 4 cut(s) 76, 166, 247, 372
Eco24I GRGCYC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 887
Eco53kI GAGCTC 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 400, 604
EcoT14I CCWWGG 4 cut(s) 76, 166, 247, 372
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 4 cut(s) 76, 166, 247, 372
FaeI CATG 7 cut(s) 170, 225, 376, 472, 488, 778, 872
FaqI GGGAC 1 cut(s) 873
FatI CATG 7 cut(s) 166, 221, 372, 468, 484, 774, 868
FauNDI CATATG 2 cut(s) 430, 478
Fnu4HI GCNGC 5 cut(s) 86, 255, 315, 441, 489
FokI GGATG 2 cut(s) 389, 447
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 5 cut(s) 86, 255, 315, 441, 489
FspBI CTAG 1 cut(s) 266
GluI GCNGC 5 cut(s) 86, 255, 315, 441, 489
HaeIII GGCC 4 cut(s) 371, 632, 693, 769
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 77
Hin1II CATG 7 cut(s) 170, 225, 376, 472, 488, 778, 872
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 2 cut(s) 761, 803
HinfI GANTC 4 cut(s) 332, 660, 677, 812
HpaII CCGG 1 cut(s) 598
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 2 cut(s) 127, 358
Hpy188III TCNNGA 6 cut(s) 47, 302, 494, 573, 750, 809
Hpy8I GTNNAC 1 cut(s) 727
Hpy99I CGWCG 1 cut(s) 858
HpyAV CCTTC 2 cut(s) 189, 253
HpyCH4IV ACGT 2 cut(s) 729, 853
HpyCH4V TGCA 3 cut(s) 440, 488, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 260, 719
HpyF3I CTNAG 2 cut(s) 495, 764
HpySE526I ACGT 2 cut(s) 729, 853
Hsp92II CATG 7 cut(s) 170, 225, 376, 472, 488, 778, 872
KroI GCCGGC 1 cut(s) 597
KroNI GCCGGC 1 cut(s) 599
Kzo9I GATC 2 cut(s) 754, 837
LmnI GCTCC 3 cut(s) 448, 496, 548
Lsp1109I GCAGC 5 cut(s) 72, 241, 326, 452, 500
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 729, 853
MaeIII GTNAC 3 cut(s) 89, 302, 818
MalI GATC 2 cut(s) 756, 839
MboI GATC 2 cut(s) 754, 837
MboII GAAGA 3 cut(s) 250, 266, 588
MflI RGATCY 2 cut(s) 754, 837
MhlI GDGCHC 3 cut(s) 165, 476, 715
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 6 cut(s) 66, 155, 387, 563, 617, 669
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 326, 669
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 4 cut(s) 12, 43, 121, 674
Mox20I TGGCCA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 597
MroXI GAANNNNTTC 2 cut(s) 141, 199
MscI TGGCCA 1 cut(s) 371
MseI TTAA 7 cut(s) 24, 309, 386, 624, 687, 717, 878
MslI CAYNNNNRTG 3 cut(s) 220, 402, 433
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 2 cut(s) 402, 606
MvaI CCWGG 2 cut(s) 402, 606
MwoI GCNNNNNNNGC 3 cut(s) 251, 260, 719
NaeI GCCGGC 1 cut(s) 599
NcoI CCATGG 2 cut(s) 166, 372
NdeI CATATG 2 cut(s) 430, 478
NdeII GATC 2 cut(s) 754, 837
NgoMIV GCCGGC 1 cut(s) 597
NlaIII CATG 7 cut(s) 170, 225, 376, 472, 488, 778, 872
NlaIV GGNNCC 2 cut(s) 406, 889
NmuCI GTSAC 3 cut(s) 89, 302, 818
NspI RCATGY 2 cut(s) 488, 872
OliI CACNNNNGTG 1 cut(s) 402
PciI ACATGT 1 cut(s) 868
PdiI GCCGGC 1 cut(s) 599
PdmI GAANNNNTTC 2 cut(s) 141, 199
PfeI GAWTC 2 cut(s) 677, 812
PkrI GCNGC 5 cut(s) 87, 256, 316, 442, 490
PleI GAGTC 2 cut(s) 326, 668
PpsI GAGTC 2 cut(s) 326, 668
PscI ACATGT 1 cut(s) 868
PshBI ATTAAT 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 400, 604
PspGI CCWGG 2 cut(s) 400, 604
PspN4I GGNNCC 2 cut(s) 406, 889
PspPI GGNCC 2 cut(s) 630, 887
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 2 cut(s) 754, 837
PvuII CAGCTG 1 cut(s) 85
RseI CAYNNNNRTG 3 cut(s) 220, 402, 433
SacI GAGCTC 1 cut(s) 715
SaqAI TTAA 7 cut(s) 24, 309, 386, 624, 687, 717, 878
SatI GCNGC 5 cut(s) 86, 255, 315, 441, 489
Sau3AI GATC 2 cut(s) 754, 837
Sau96I GGNCC 2 cut(s) 630, 887
SchI GAGTC 2 cut(s) 326, 669
ScrFI CCNGG 2 cut(s) 402, 606
SduI GDGCHC 3 cut(s) 165, 476, 715
SfcI CTRYAG 2 cut(s) 507, 702
SinI GGWCC 1 cut(s) 887
SmiMI CAYNNNNRTG 3 cut(s) 220, 402, 433
Sse9I AATT 6 cut(s) 66, 155, 387, 563, 617, 669
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 715
StyD4I CCNGG 2 cut(s) 400, 604
StyI CCWWGG 4 cut(s) 76, 166, 247, 372
TaiI ACGT 2 cut(s) 732, 856
TaqI TCGA 1 cut(s) 561
TaqII GACCGA 1 cut(s) 606
TasI AATT 6 cut(s) 66, 155, 387, 563, 617, 669
TfiI GAWTC 2 cut(s) 677, 812
Tru1I TTAA 7 cut(s) 24, 309, 386, 624, 687, 717, 878
Tru9I TTAA 7 cut(s) 24, 309, 386, 624, 687, 717, 878
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 3 cut(s) 89, 302, 818
TseI GCWGC 5 cut(s) 85, 254, 314, 440, 488
Tsp45I GTSAC 3 cut(s) 89, 302, 818
TspDTI ATGAA 5 cut(s) 168, 210, 251, 297, 791
TspRI CASTG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 887
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 3 cut(s) 66, 155, 669
XceI RCATGY 2 cut(s) 488, 872
XmnI GAANNNNTTC 2 cut(s) 141, 199
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.