Rh2AG106400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
9342608 .. 9345845
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG106400.1

Sequence Viewer

Length: 342 bp
ATGCTCGAATTGTTGTCAGGAAAACGAGTTTTTGACCGGAGCCGGCCACCCGGGGAACAGAGATTAGTTAAATGGGCCAAACCTTACATTGTCAGCAAACACAGAGTCCTCCAAATTTTTGATTCTCATATTAAAGGCCTGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAGGAATCCAGTGACATGGATGGCTTGGGGATCTCTCAAAATAAACGTTGCCAATATCCACATGGCAGTTTAATCAATGGTCCCAAATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

10.07

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 298
AclWI GGATC 2 cut(s) 194, 290
AcoI YGGCCR 2 cut(s) 44, 150
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 158, 208, 250
AluI AGCT 3 cut(s) 158, 208, 250
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 2 cut(s) 194, 290
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 5 cut(s) 44, 75, 136, 150, 212
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspS9I GGNCC 2 cut(s) 75, 332
AsuC2I CCSGG 2 cut(s) 51, 52
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 51, 52
Bme1390I CCNGG 2 cut(s) 51, 52
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 75, 332
BmiI GGNNCC 2 cut(s) 41, 334
BmrFI CCNGG 2 cut(s) 51, 52
Bpu10I CCTNAGC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 51, 52
BsaJI CCNNGG 2 cut(s) 50, 51
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 50, 51
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 261
BshFI GGCC 5 cut(s) 46, 77, 138, 152, 214
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 3 cut(s) 37, 43, 51
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 5 cut(s) 46, 77, 138, 152, 214
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 199, 282
BspANI GGCC 5 cut(s) 46, 77, 138, 152, 214
BspLI GGNNCC 2 cut(s) 41, 334
BspPI GGATC 2 cut(s) 194, 290
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 50, 51
BssMI GATC 2 cut(s) 199, 282
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 2 cut(s) 202, 285
BstMBI GATC 2 cut(s) 199, 282
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 49, 50
BstX2I RGATCY 2 cut(s) 199, 282
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 199, 282
BsuRI GGCC 5 cut(s) 46, 77, 138, 152, 214
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 75, 332
Cfr9I CCCGGG 1 cut(s) 50
CviAII CATG 3 cut(s) 220, 268, 314
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 201, 284
DpnII GATC 2 cut(s) 199, 282
EaeI YGGCCR 2 cut(s) 44, 150
Ecl136II GAGCTC 1 cut(s) 158
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 3 cut(s) 223, 271, 317
FaiI YATR 4 cut(s) 129, 221, 269, 315
FaqI GGGAC 1 cut(s) 318
FatI CATG 3 cut(s) 219, 267, 313
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 160
HaeIII GGCC 5 cut(s) 46, 77, 138, 152, 214
HapII CCGG 3 cut(s) 37, 43, 51
Hin1II CATG 3 cut(s) 223, 271, 317
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 206, 248
HinfI GANTC 3 cut(s) 105, 122, 257
HpaII CCGG 3 cut(s) 37, 43, 51
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 18, 195, 254
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 3 cut(s) 223, 271, 317
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 199, 282
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 8 cut(s) 3, 50, 56, 64, 152, 166, 239, 274
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 201, 284
MboI GATC 2 cut(s) 199, 282
MflI RGATCY 2 cut(s) 199, 282
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 8, 114
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 152
MseI TTAA 4 cut(s) 69, 132, 162, 323
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 3 cut(s) 37, 43, 51
MspR9I CCNGG 2 cut(s) 51, 52
MwoI GCNNNNNNNGC 1 cut(s) 164
NaeI GCCGGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 51, 52
NdeII GATC 2 cut(s) 199, 282
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 3 cut(s) 223, 271, 317
NlaIV GGNNCC 2 cut(s) 41, 334
NmuCI GTSAC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 122, 257
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 41, 334
PspPI GGNCC 2 cut(s) 75, 332
PsuI RGATCY 2 cut(s) 199, 282
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 4 cut(s) 69, 132, 162, 323
Sau3AI GATC 2 cut(s) 199, 282
Sau96I GGNCC 2 cut(s) 75, 332
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 51, 52
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 85, 160, 177, 210, 252, 301
SinI GGWCC 1 cut(s) 332
SmaI CCCGGG 1 cut(s) 52
Sse9I AATT 2 cut(s) 8, 114
SseBI AGGCCT 1 cut(s) 138
SstI GAGCTC 1 cut(s) 160
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 49, 50
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 8, 114
TfiI GAWTC 2 cut(s) 122, 257
Tru1I TTAA 4 cut(s) 69, 132, 162, 323
Tru9I TTAA 4 cut(s) 69, 132, 162, 323
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 236
TspMI CCCGGG 1 cut(s) 50
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.