Rh1AG342300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
57814214 .. 57815262
1049 bp
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UTR
Exon/CDS
Intron
Rh1AG342300.1

Sequence Viewer

Length: 477 bp
ATGGCCACAGGTCATTTAACCGCCAAAAGTGATGTGTATAGTTTTGGGGTTGTTATGCTCGAAATGTTGTCTGGAAGACGAGCTGTGGACAAGAACCGGCCTACAGGGGAACACAGCTTAGTTGAGTGGGCCAAACCTTACCTTGCCAGCAAACGCAAAGTTCTCCAAGTTTTTGACGCTCGTATTGATGGCCAGTACTCTGTGGCTTCAGCTCTTAAAGCAGTTAACCTTGCAATTCGATGCTTATCAACAGAACCCAAGTTTAGGCCAATCATGAATGATGTGGTAAAAGCATTAGAGCAGCTTCAGGAACCTGAAGACATGGAGGGTCCGGGACCCTCCCAAAATGAACCTCGCCAAAATCTTCATGCCAGTTCAAGTAATGGTCCCCAAAATCGAAGGAAAAGTATGAACGGAACCAGCAATGCAAGAAATGCTTCTCTCCACAGGCCATCTGCTGCACGTGGAAATACATAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.34

Weight (kDa)

9.86

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 3, 190
AcuI CTGAAG 3 cut(s) 192, 290, 336
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 1 cut(s) 378
AluBI AGCT 4 cut(s) 83, 117, 212, 304
AluI AGCT 4 cut(s) 83, 117, 212, 304
AoxI GGCC 6 cut(s) 3, 98, 129, 190, 266, 449
ApeKI GCWGC 2 cut(s) 301, 458
Asp700I GAANNNNTTC 1 cut(s) 436
AspS9I GGNCC 4 cut(s) 129, 329, 335, 386
AsuC2I CCSGG 1 cut(s) 333
AvaII GGWCC 3 cut(s) 329, 335, 386
BalI TGGCCA 2 cut(s) 5, 192
BbrPI CACGTG 1 cut(s) 464
BbsI GAAGAC 2 cut(s) 82, 324
BbvI GCAGC 2 cut(s) 313, 445
BccI CCATC 2 cut(s) 182, 460
BcnI CCSGG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 302, 459
BlsI GCNGC 2 cut(s) 303, 460
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 3 cut(s) 329, 335, 386
BmgT120I GGNCC 4 cut(s) 129, 329, 335, 386
BmiI GGNNCC 6 cut(s) 312, 330, 336, 337, 388, 418
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 230
BpiI GAAGAC 2 cut(s) 82, 324
BpuMI CCSGG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 193, 372
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 430
BseNI ACTGG 2 cut(s) 193, 372
BseXI GCAGC 2 cut(s) 313, 445
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 6 cut(s) 5, 100, 131, 192, 268, 451
BsiSI CCGG 2 cut(s) 97, 332
BslFI GGGAC 2 cut(s) 348, 372
BslI CCNNNNNNNGG 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 348, 372
BsnI GGCC 6 cut(s) 5, 100, 131, 192, 268, 451
BspACI CCGC 1 cut(s) 21
BspANI GGCC 6 cut(s) 5, 100, 131, 192, 268, 451
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 6 cut(s) 312, 330, 336, 337, 388, 418
BsrDI GCAATG 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 2 cut(s) 193, 372
BssAI RCCGGY 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 218, 434
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 313, 445
BstV2I GAAGAC 2 cut(s) 82, 324
BsuRI GGCC 6 cut(s) 5, 100, 131, 192, 268, 451
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 129, 329, 335, 386
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 274, 322, 368
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 3, 190
Eco47I GGWCC 3 cut(s) 329, 335, 386
Eco57I CTGAAG 3 cut(s) 192, 290, 336
Eco72I CACGTG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 335
FaeI CATG 3 cut(s) 277, 325, 371
FaiI YATR 7 cut(s) 39, 56, 275, 323, 369, 410, 475
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FaqI GGGAC 2 cut(s) 348, 372
FatI CATG 3 cut(s) 273, 321, 367
Fnu4HI GCNGC 2 cut(s) 302, 459
Fsp4HI GCNGC 2 cut(s) 302, 459
GluI GCNGC 2 cut(s) 302, 459
HaeIII GGCC 6 cut(s) 5, 100, 131, 192, 268, 451
HapII CCGG 2 cut(s) 97, 332
HgaI GACGC 1 cut(s) 185
Hin1II CATG 3 cut(s) 277, 325, 371
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 2 cut(s) 97, 332
Hpy166II GTNNAC 2 cut(s) 88, 226
Hpy188III TCNNGA 3 cut(s) 72, 274, 308
Hpy8I GTNNAC 2 cut(s) 88, 226
HpyAV CCTTC 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 233, 428, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 434
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 3 cut(s) 277, 325, 371
KflI GGGWCCC 1 cut(s) 335
KspAI GTTAAC 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 313, 445
LweI GCATC 1 cut(s) 230
MaeII ACGT 1 cut(s) 463
MboII GAAGA 3 cut(s) 87, 329, 356
MlsI TGGCCA 2 cut(s) 5, 192
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 2 cut(s) 5, 192
MnlI CCTC 3 cut(s) 319, 349, 363
Mox20I TGGCCA 2 cut(s) 5, 192
MroXI GAANNNNTTC 1 cut(s) 436
MscI TGGCCA 2 cut(s) 5, 192
MseI TTAA 3 cut(s) 17, 216, 225
Msp20I TGGCCA 2 cut(s) 5, 192
MspI CCGG 2 cut(s) 97, 332
MspR9I CCNGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 218, 434
NciI CCSGG 1 cut(s) 333
NlaIII CATG 3 cut(s) 277, 325, 371
NlaIV GGNNCC 6 cut(s) 312, 330, 336, 337, 388, 418
PagI TCATGA 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 2 cut(s) 303, 460
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 335
PspCI CACGTG 1 cut(s) 464
PspN4I GGNNCC 6 cut(s) 312, 330, 336, 337, 388, 418
PspPI GGNCC 4 cut(s) 129, 329, 335, 386
PspPPI RGGWCCY 1 cut(s) 335
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 17, 216, 225
SatI GCNGC 2 cut(s) 302, 459
Sau96I GGNCC 4 cut(s) 129, 329, 335, 386
ScaI AGTACT 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 333
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 3 cut(s) 329, 335, 386
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 60, 238, 397
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 3 cut(s) 17, 216, 225
Tru9I TTAA 3 cut(s) 17, 216, 225
TseI GCWGC 2 cut(s) 301, 458
TspDTI ATGAA 4 cut(s) 290, 356, 363, 425
TspGWI ACGGA 1 cut(s) 429
VpaK11BI GGWCC 3 cut(s) 329, 335, 386
XmnI GAANNNNTTC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.