Rmu_sc0008470.1_g000013

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008470.1
OG0000305
Physical Location & Seq
Reverse (-)
69225 .. 71843
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008470.1_g000013.1.cds

Sequence Viewer

Length: 1029 bp
atgagtggtgggattcgaacaagcgtgaaggggtaccttattgcgaaacgtctcagtctgactggggagatagatacagtgcatgagatgaatgagatcatcaatacaaatttcactgcactccaagctcacaatgtgccttcaactcctcagacagagggtgaaatcttgttaaaaagatttctcttcaatgaactgaaaatagcaacctggaactttcatcctgataatatggtgggtgtaggtggttttggttatgtttttaaggggtgggttgatggtaattcatcaacagctgccaaggctggtagtggcatgttaattgctgtgaagacgattgaccaagaaggtttccagggtcaagaggaatggttgacagaaatttactatctaggaaggttgcgacatccaaatcttgtgaagttgttgggttattgctttgaggacaaccaccggctcctggtttatgaatttatgcctcatggaagcttggagattcatctatatggaagggattcttaccttgaaccactttcatggaccctgcgtatgaagattgcccttggtgttgccaaggttcttgcatttcttcatggtcatttatcctgcaagagtgatgtatatggttttggagttgttatgcttgaaatgttgtctggaagacgagttctggataataaccgtccacccagggaacacaatttagttgaatgggccaaaccttaccttgccagcaaaagcagagctctcaaattttttgatgctcgtattgaaggccagtactctgtggcaggagctcttaaagcagctaaccttgcaaatcgatgcatatcagcagaacccgagtttaggccaaacatgaatgaggtggtcacagcattagagcagcttcaggaatctggtgacatggagggtttgggaatctcacaaaatgagcctcgccaaactccttgtgccaatttaagcaatcgcaggagaagtacaagctggatcagcttcaggccatgtgcttcccgcagctatacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

342

Amino Acids

38.41

Weight (kDa)

8.21

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 1 cut(s) 1015
AclWI GGATC 1 cut(s) 998
AcsI RAATTY 4 cut(s) 109, 381, 470, 752
AcuI CTGAAG 2 cut(s) 875, 982
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 3 cut(s) 35, 782, 982
AfiI CCNNNNNNNGG 2 cut(s) 460, 849
AgsI TTSAA 6 cut(s) 144, 190, 527, 647, 710, 773
AjnI CCWGG 4 cut(s) 209, 354, 459, 689
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
Alw21I GWGCWC 2 cut(s) 748, 799
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 998
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 4 cut(s) 714, 775, 851, 1001
ApeKI GCWGC 4 cut(s) 296, 806, 886, 1017
ApoI RAATTY 4 cut(s) 109, 381, 470, 752
Asp700I GAANNNNTTC 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 540, 714
AsuHPI GGTGA 2 cut(s) 173, 914
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 1 cut(s) 540
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 2 cut(s) 748, 799
BbsI GAAGAC 2 cut(s) 338, 667
Bbv12I GWGCWC 2 cut(s) 748, 799
BbvI GCAGC 3 cut(s) 283, 818, 898
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 4 cut(s) 211, 356, 461, 691
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 392
BisI GCNGC 4 cut(s) 297, 807, 887, 1018
BlsI GCNGC 4 cut(s) 298, 808, 888, 1019
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 4 cut(s) 211, 356, 461, 691
Bme18I GGWCC 1 cut(s) 540
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 540, 714
BmiI GGNNCC 3 cut(s) 35, 458, 542
BmrFI CCNGG 4 cut(s) 211, 356, 461, 691
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 751, 815
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 338, 667
Bpu14I TTCGAA 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 823
BsaBI GATNNNNATC 1 cut(s) 829
BsaJI CCNNGG 6 cut(s) 300, 355, 562, 573, 689, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 849
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 67, 778
Bse8I GATNNNNATC 1 cut(s) 829
BseBI CCWGG 4 cut(s) 211, 356, 461, 691
BseCI ATCGAT 1 cut(s) 823
BseDI CCNNGG 6 cut(s) 300, 355, 562, 573, 689, 690
BseGI GGATG 2 cut(s) 220, 406
BseJI GATNNNNATC 1 cut(s) 829
BseLI CCNNNNNNNGG 2 cut(s) 460, 849
BseMII CTCAG 2 cut(s) 67, 164
BseNI ACTGG 2 cut(s) 67, 778
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 3 cut(s) 283, 818, 898
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 4 cut(s) 716, 777, 853, 1003
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 748, 799
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 460, 849
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 4 cut(s) 716, 777, 853, 1003
BsoBI CYCGRG 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 748, 799
Bsp143I GATC 2 cut(s) 96, 990
BspACI CCGC 1 cut(s) 1015
BspANI GGCC 4 cut(s) 716, 777, 853, 1003
BspCNI CTCAG 2 cut(s) 66, 163
BspDI ATCGAT 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 35, 458, 542
BspPI GGATC 1 cut(s) 998
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 2 cut(s) 67, 778
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 6 cut(s) 300, 355, 562, 573, 689, 690
BssMI GATC 2 cut(s) 96, 990
BssT1I CCWWGG 3 cut(s) 300, 562, 573
Bst2UI CCWGG 4 cut(s) 211, 356, 461, 691
Bst4CI ACNGT 2 cut(s) 79, 683
Bst6I CTCTTC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 2 cut(s) 53, 150
BstF5I GGATG 2 cut(s) 220, 406
BstKTI GATC 2 cut(s) 99, 993
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 96, 990
BstMWI GCNNNNNNNGC 5 cut(s) 125, 302, 803, 815, 993
BstNI CCWGG 4 cut(s) 211, 356, 461, 691
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 4 cut(s) 209, 354, 459, 689
BstV1I GCAGC 3 cut(s) 283, 818, 898
BstV2I GAAGAC 2 cut(s) 338, 667
BstXI CCANNNNNNTGG 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 823
BsuRI GGCC 4 cut(s) 716, 777, 853, 1003
BsuTUI ATCGAT 1 cut(s) 823
BtsCI GGATG 2 cut(s) 220, 406
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 84, 114
Cac8I GCNNGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 540, 714
ClaI ATCGAT 1 cut(s) 823
Csp6I GTAC 3 cut(s) 34, 781, 981
CviAII CATG 8 cut(s) 83, 316, 482, 537, 593, 859, 907, 1005
CviQI GTAC 3 cut(s) 34, 781, 981
DdeI CTNAG 2 cut(s) 53, 150
DpnI GATC 2 cut(s) 98, 992
DpnII GATC 2 cut(s) 96, 990
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 2 cut(s) 746, 797
Eco130I CCWWGG 3 cut(s) 300, 562, 573
Eco24I GRGCYC 2 cut(s) 748, 799
Eco47I GGWCC 1 cut(s) 540
Eco53kI GAGCTC 2 cut(s) 746, 797
Eco57I CTGAAG 2 cut(s) 875, 982
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 2 cut(s) 746, 797
EcoRII CCWGG 4 cut(s) 209, 354, 459, 689
EcoT14I CCWWGG 3 cut(s) 300, 562, 573
EcoT22I ATGCAT 1 cut(s) 830
EcoT38I GRGCYC 2 cut(s) 748, 799
ErhI CCWWGG 3 cut(s) 300, 562, 573
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 8 cut(s) 86, 319, 485, 540, 596, 862, 910, 1008
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FatI CATG 8 cut(s) 82, 315, 481, 536, 592, 858, 906, 1004
FauI CCCGC 1 cut(s) 1022
Fnu4HI GCNGC 4 cut(s) 297, 807, 887, 1018
FokI GGATG 2 cut(s) 207, 393
FriOI GRGCYC 2 cut(s) 748, 799
Fsp4HI GCNGC 4 cut(s) 297, 807, 887, 1018
FspBI CTAG 1 cut(s) 392
GluI GCNGC 4 cut(s) 297, 807, 887, 1018
HaeIII GGCC 4 cut(s) 716, 777, 853, 1003
HapII CCGG 1 cut(s) 454
Hin1II CATG 8 cut(s) 86, 319, 485, 540, 596, 862, 910, 1008
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 5 cut(s) 13, 496, 515, 896, 921
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 173, 914
Hpy166II GTNNAC 2 cut(s) 375, 686
Hpy188I TCNGA 2 cut(s) 60, 153
Hpy188III TCNNGA 5 cut(s) 224, 362, 657, 671, 893
Hpy8I GTNNAC 2 cut(s) 375, 686
HpyAV CCTTC 6 cut(s) 22, 150, 341, 390, 504, 767
HpyCH4III ACNGT 2 cut(s) 79, 683
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 6 cut(s) 82, 119, 584, 609, 818, 828
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 302, 803, 815, 993
HpyF3I CTNAG 2 cut(s) 53, 150
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 8 cut(s) 86, 319, 485, 540, 596, 862, 910, 1008
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 96, 990
LmnI GCTCC 2 cut(s) 462, 794
Lsp1109I GCAGC 3 cut(s) 283, 818, 898
LweI GCATC 2 cut(s) 751, 815
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 871, 902
MalI GATC 2 cut(s) 98, 992
MboI GATC 2 cut(s) 96, 990
MboII GAAGA 5 cut(s) 178, 343, 565, 581, 672
MhlI GDGCHC 2 cut(s) 748, 799
MluCI AATT 8 cut(s) 109, 283, 321, 381, 470, 700, 752, 958
MnlI CCTC 8 cut(s) 151, 159, 358, 436, 489, 859, 904, 948
Mph1103I ATGCAT 1 cut(s) 830
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 5 cut(s) 173, 264, 320, 801, 962
MslI CAYNNNNRTG 2 cut(s) 504, 535
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 4 cut(s) 211, 356, 461, 691
MvaI CCWGG 4 cut(s) 211, 356, 461, 691
MwoI GCNNNNNNNGC 5 cut(s) 125, 302, 803, 815, 993
NdeII GATC 2 cut(s) 96, 990
NlaIII CATG 8 cut(s) 86, 319, 485, 540, 596, 862, 910, 1008
NlaIV GGNNCC 3 cut(s) 35, 458, 542
NmuCI GTSAC 2 cut(s) 871, 902
NsiI ATGCAT 1 cut(s) 830
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 16
PasI CCCWGGG 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 5 cut(s) 13, 496, 515, 896, 921
PkrI GCNGC 4 cut(s) 298, 808, 888, 1019
Psp124BI GAGCTC 2 cut(s) 748, 799
Psp6I CCWGG 4 cut(s) 209, 354, 459, 689
PspGI CCWGG 4 cut(s) 209, 354, 459, 689
PspN4I GGNNCC 3 cut(s) 35, 458, 542
PspPI GGNCC 2 cut(s) 540, 714
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 3 cut(s) 35, 782, 982
RsaNI GTAC 3 cut(s) 34, 781, 981
RseI CAYNNNNRTG 2 cut(s) 504, 535
SacI GAGCTC 2 cut(s) 748, 799
SaqAI TTAA 5 cut(s) 173, 264, 320, 801, 962
SatI GCNGC 4 cut(s) 297, 807, 887, 1018
Sau3AI GATC 2 cut(s) 96, 990
Sau96I GGNCC 2 cut(s) 540, 714
ScaI AGTACT 1 cut(s) 782
ScrFI CCNGG 4 cut(s) 211, 356, 461, 691
SduI GDGCHC 2 cut(s) 748, 799
SfaNI GCATC 2 cut(s) 751, 815
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 504, 535
Sse9I AATT 8 cut(s) 109, 283, 321, 381, 470, 700, 752, 958
SsiI CCGC 1 cut(s) 1015
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 2 cut(s) 748, 799
StyD4I CCNGG 4 cut(s) 209, 354, 459, 689
StyI CCWWGG 3 cut(s) 300, 562, 573
TaaI ACNGT 2 cut(s) 79, 683
TaiI ACGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 16, 823
TasI AATT 8 cut(s) 109, 283, 321, 381, 470, 700, 752, 958
TatI WGTACW 2 cut(s) 780, 980
TfiI GAWTC 5 cut(s) 13, 496, 515, 896, 921
Tru1I TTAA 5 cut(s) 173, 264, 320, 801, 962
Tru9I TTAA 5 cut(s) 173, 264, 320, 801, 962
TscAI CASTG 2 cut(s) 84, 121
TseFI GTSAC 2 cut(s) 871, 902
TseI GCWGC 4 cut(s) 296, 806, 886, 1017
Tsp45I GTSAC 2 cut(s) 871, 902
TspRI CASTG 2 cut(s) 84, 121
VpaK11BI GGWCC 1 cut(s) 540
XapI RAATTY 4 cut(s) 109, 381, 470, 752
XceI RCATGY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 782
Zsp2I ATGCAT 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.