Rh7CG338300

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000305
Physical Location & Seq
Forward (+)
37825020 .. 37825310
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG338300.1

Sequence Viewer

Length: 291 bp
ATGATTTTCTGGAAATTTCTCCTATTTCCGCTACTAGCCCTAGCTTTCTTCCCCGTCTTCTTCCATTCCCACCTCCTACTGCGGCCGTTGATCATAAGCATGCCGAGCCCCATTTCAAGGAGCTTGAGGAAGAGCTTAGGCTACAGTGTACCACCATGGAAGACAATCCCCGAGGAATGTGTAGAGTATGTGAAGGACTACTTCACCGGCTGGGATTATGGTATTGATTTGGAGAGGGTTTCTAACGATGCTGTTTATACCAAGAGTGTTGAATTGAGTGGTACAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

96

Amino Acids

11.13

Weight (kDa)

6.71

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 82
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 2 cut(s) 150, 283
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 117, 272
AluBI AGCT 3 cut(s) 44, 123, 135
AluI AGCT 3 cut(s) 44, 123, 135
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 170
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 49, 167
BceAI ACGGC 1 cut(s) 70
BclI TGATCA 1 cut(s) 90
BfaI CTAG 2 cut(s) 35, 41
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 170
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 49, 167
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 155, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 155, 171
BseLI CCNNNNNNNGG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 85
BsiEI CGRYCG 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 2 cut(s) 29, 82
BspANI GGCC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 155, 171
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 146, 286
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 155
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 49, 167
BstZI CGGCCG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 151, 291
Cac8I GCNNGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 206
Csp6I GTAC 2 cut(s) 149, 282
CviAII CATG 2 cut(s) 100, 156
CviJI RGCY 8 cut(s) 38, 44, 85, 108, 123, 135, 141, 210
CviKI_1 RGCY 8 cut(s) 38, 44, 85, 108, 123, 135, 141, 210
CviQI GTAC 2 cut(s) 149, 282
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 83
EagI CGGCCG 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 2 cut(s) 103, 159
FaiI YATR 6 cut(s) 95, 101, 157, 189, 219, 258
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 2 cut(s) 99, 155
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 2 cut(s) 35, 41
GluI GCNGC 1 cut(s) 83
GsaI CCCAGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 207
Hin1II CATG 2 cut(s) 103, 159
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 146, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 2 cut(s) 103, 159
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 2 cut(s) 196, 220
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 35, 41
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 5 cut(s) 40, 49, 52, 142, 172
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 14, 272
MnlI CCTC 4 cut(s) 83, 120, 166, 228
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 155
NdeII GATC 1 cut(s) 90
NlaIII CATG 2 cut(s) 103, 159
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 210
RsaI GTAC 2 cut(s) 150, 283
RsaNI GTAC 2 cut(s) 149, 282
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 46, 75, 125, 137
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SphI GCATGC 1 cut(s) 103
Sse9I AATT 2 cut(s) 14, 272
SsiI CCGC 2 cut(s) 29, 82
SspMI CTAG 2 cut(s) 35, 41
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 146, 286
TasI AATT 2 cut(s) 14, 272
TauI GCSGC 1 cut(s) 85
TscAI CASTG 2 cut(s) 151, 291
TspRI CASTG 2 cut(s) 151, 291
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 103
XspI CTAG 2 cut(s) 35, 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.