Rmu_sc0014291.1_g000008
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014291.1
OG0000305
Physical Location & Seq
Reverse (-)
43606 .. 53206
9601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014291.1_g000008.1.cds

Sequence Viewer

Length: 909 bp
atgggcaggaagttcttcgtcggcggcaactggaaatgcaatggaacaatcgatgaggttaagaagatcgtgaacttgctcaatgagggaaaagtgccgtcacaagatgttgtggaggttgtggttagcccaccgtatgtgtttcttccattggtgaagagcactttgaggccagatttccatgttgcggcacagaactgctgggtcaagaagggtggtgccttcactggtgaagttagtgctgagatgcttaaaaatctagaggttccatgggtcatccttggtcattccgaaagaagagctcttttgggtgaatccaatgagtttgttggggataagcatctgaaatcagcttctatatggttcacttctggaagattttccttctccaatccccaatattctgaccagcttatggtattgatatctagttcactcttttgtcatttaaccgccaaaagtgatgtgtatagttttggggttgttatgctcgaaatgttgtctggaagacgagctgtggacaagaaccggcctacaggggaacacagcttagtagagtgggccaaaccttaccttgccagcaaacgcaaagttctccaagtttttgacgctcgtattgatggccagtactctgtggcttcagctcttaaagcagttaaccttgcaattcgatgcttatcaacagaacccaagtttaggccaatcatgaatgatgtggtaaaagcattagagcagcttcaggaacctgaagacatggagggtccgggaccctcccaaaatgaacctcgccaaaatcttcatgccagttcaagtaatggtccccaaaatcgaaggaaaagtatgaacggaaccagcaatgcaagaaatgcttctctccacaggccatctgctgcacgtggaaatacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.43

Weight (kDa)

9.41

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 415
AciI CCGC 3 cut(s) 24, 188, 453
AcoI YGGCCR 1 cut(s) 622
AcuI CTGAAG 3 cut(s) 624, 722, 768
AcvI CACGTG 1 cut(s) 896
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 187, 415, 696
AgsI TTSAA 1 cut(s) 810
AluBI AGCT 7 cut(s) 302, 353, 412, 515, 549, 644, 736
AluI AGCT 7 cut(s) 302, 353, 412, 515, 549, 644, 736
Alw21I GWGCWC 2 cut(s) 164, 304
AoxI GGCC 6 cut(s) 170, 530, 561, 622, 698, 881
ApeKI GCWGC 2 cut(s) 733, 890
Asp700I GAANNNNTTC 3 cut(s) 14, 379, 868
AspS9I GGNCC 4 cut(s) 561, 761, 767, 818
AsuC2I CCSGG 1 cut(s) 765
AsuHPI GGTGA 3 cut(s) 166, 242, 323
AvaII GGWCC 3 cut(s) 761, 767, 818
BalI TGGCCA 1 cut(s) 624
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 304
BbrPI CACGTG 1 cut(s) 896
BbsI GAAGAC 2 cut(s) 514, 756
Bbv12I GWGCWC 2 cut(s) 164, 304
BbvI GCAGC 2 cut(s) 745, 877
BccI CCATC 2 cut(s) 614, 892
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 765
BfaI CTAG 2 cut(s) 260, 429
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 4 cut(s) 25, 189, 734, 891
BlsI GCNGC 4 cut(s) 26, 190, 735, 892
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 1 cut(s) 765
Bme18I GGWCC 3 cut(s) 761, 767, 818
BmgT120I GGNCC 4 cut(s) 561, 761, 767, 818
BmiI GGNNCC 8 cut(s) 220, 267, 744, 762, 768, 769, 820, 850
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 3 cut(s) 237, 349, 662
BpiI GAAGAC 2 cut(s) 514, 756
BpuMI CCSGG 1 cut(s) 765
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 896
BsaBI GATNNNNATC 2 cut(s) 339, 676
BsaJI CCNNGG 2 cut(s) 269, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 415, 696
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 4 cut(s) 35, 232, 625, 804
Bse3DI GCAATG 2 cut(s) 46, 862
Bse8I GATNNNNATC 2 cut(s) 339, 676
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 269, 280
BseGI GGATG 1 cut(s) 276
BseJI GATNNNNATC 2 cut(s) 339, 676
BseLI CCNNNNNNNGG 3 cut(s) 187, 415, 696
BseMI GCAATG 2 cut(s) 46, 862
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 4 cut(s) 35, 232, 625, 804
BseXI GCAGC 2 cut(s) 745, 877
BseYI CCCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 6 cut(s) 172, 532, 563, 624, 700, 883
BshNI GGYRCC 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 164, 304
BsiSI CCGG 2 cut(s) 529, 764
BslFI GGGAC 2 cut(s) 780, 804
BslI CCNNNNNNNGG 3 cut(s) 187, 415, 696
BsmFI GGGAC 2 cut(s) 780, 804
BsnI GGCC 6 cut(s) 172, 532, 563, 624, 700, 883
Bsp1286I GDGCHC 2 cut(s) 164, 304
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 269
BspACI CCGC 3 cut(s) 24, 188, 453
BspANI GGCC 6 cut(s) 172, 532, 563, 624, 700, 883
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 51
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 8 cut(s) 220, 267, 744, 762, 768, 769, 820, 850
BspQI GCTCTTC 2 cut(s) 152, 292
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 46, 862
BsrFI RCCGGY 1 cut(s) 528
BsrI ACTGG 4 cut(s) 35, 232, 625, 804
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 2 cut(s) 269, 280
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 2 cut(s) 269, 280
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 152, 292
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 2 cut(s) 243, 550
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 650, 866
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 745, 877
BstV2I GAAGAC 2 cut(s) 514, 756
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 6 cut(s) 172, 532, 563, 624, 700, 883
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 580
CciI TCATGA 1 cut(s) 705
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 4 cut(s) 561, 761, 767, 818
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 628
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 5 cut(s) 182, 270, 706, 754, 800
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 2 cut(s) 243, 550
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 152, 292
EarI CTCTTC 2 cut(s) 152, 292
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 269, 280
Eco24I GRGCYC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 761, 767, 818
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 3 cut(s) 624, 722, 768
Eco72I CACGTG 1 cut(s) 896
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 767
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 2 cut(s) 269, 280
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 269, 280
FaeI CATG 5 cut(s) 185, 273, 709, 757, 803
FalI AAGNNNNNCTT 2 cut(s) 853, 885
FaqI GGGAC 2 cut(s) 780, 804
FatI CATG 5 cut(s) 181, 269, 705, 753, 799
Fnu4HI GCNGC 4 cut(s) 25, 189, 734, 891
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 4 cut(s) 25, 189, 734, 891
FspBI CTAG 2 cut(s) 260, 429
GluI GCNGC 4 cut(s) 25, 189, 734, 891
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 6 cut(s) 172, 532, 563, 624, 700, 883
HapII CCGG 2 cut(s) 529, 764
HgaI GACGC 1 cut(s) 617
Hin1II CATG 5 cut(s) 185, 273, 709, 757, 803
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 1 cut(s) 314
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 2 cut(s) 529, 764
HphI GGTGA 3 cut(s) 166, 242, 323
Hpy166II GTNNAC 5 cut(s) 73, 366, 434, 520, 658
Hpy188I TCNGA 3 cut(s) 292, 345, 406
Hpy188III TCNNGA 7 cut(s) 70, 208, 260, 372, 504, 706, 740
Hpy8I GTNNAC 5 cut(s) 73, 366, 434, 520, 658
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 4 cut(s) 205, 232, 394, 825
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 895
HpyCH4V TGCA 4 cut(s) 39, 665, 860, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 866
HpyF3I CTNAG 2 cut(s) 243, 550
HpySE526I ACGT 1 cut(s) 895
Hsp92II CATG 5 cut(s) 185, 273, 709, 757, 803
KflI GGGWCCC 1 cut(s) 767
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 1 cut(s) 66
LguI GCTCTTC 2 cut(s) 152, 292
Lsp1109I GCAGC 2 cut(s) 745, 877
LweI GCATC 3 cut(s) 237, 349, 662
MaeI CTAG 2 cut(s) 260, 429
MaeII ACGT 1 cut(s) 895
MaeIII GTNAC 1 cut(s) 99
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 9 cut(s) 7, 76, 137, 169, 309, 387, 519, 761, 788
MhlI GDGCHC 2 cut(s) 164, 304
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 1 cut(s) 666
MluNI TGGCCA 1 cut(s) 624
MnlI CCTC 8 cut(s) 49, 79, 109, 162, 256, 751, 781, 795
Mox20I TGGCCA 1 cut(s) 624
MroXI GAANNNNTTC 3 cut(s) 14, 379, 868
MscI TGGCCA 1 cut(s) 624
MseI TTAA 5 cut(s) 60, 252, 449, 648, 657
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 2 cut(s) 529, 764
MspR9I CCNGG 1 cut(s) 765
MwoI GCNNNNNNNGC 2 cut(s) 650, 866
NciI CCSGG 1 cut(s) 765
NcoI CCATGG 1 cut(s) 269
NdeII GATC 1 cut(s) 66
NlaIII CATG 5 cut(s) 185, 273, 709, 757, 803
NlaIV GGNNCC 8 cut(s) 220, 267, 744, 762, 768, 769, 820, 850
NmuCI GTSAC 1 cut(s) 99
PagI TCATGA 1 cut(s) 705
PciSI GCTCTTC 2 cut(s) 152, 292
PdmI GAANNNNTTC 3 cut(s) 14, 379, 868
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 763
PkrI GCNGC 4 cut(s) 26, 190, 735, 892
PmaCI CACGTG 1 cut(s) 896
PmlI CACGTG 1 cut(s) 896
Ppu21I YACGTR 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 767
PspCI CACGTG 1 cut(s) 896
PspFI CCCAGC 1 cut(s) 201
PspN4I GGNNCC 8 cut(s) 220, 267, 744, 762, 768, 769, 820, 850
PspPI GGNCC 4 cut(s) 561, 761, 767, 818
PspPPI RGGWCCY 1 cut(s) 767
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 2 cut(s) 152, 292
SaqAI TTAA 5 cut(s) 60, 252, 449, 648, 657
SatI GCNGC 4 cut(s) 25, 189, 734, 891
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 4 cut(s) 561, 761, 767, 818
ScaI AGTACT 1 cut(s) 629
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 2 cut(s) 164, 304
SfaNI GCATC 3 cut(s) 237, 349, 662
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 761, 767, 818
Sse9I AATT 1 cut(s) 666
SsiI CCGC 3 cut(s) 24, 188, 453
SspI AATATT 1 cut(s) 401
SspMI CTAG 2 cut(s) 260, 429
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 2 cut(s) 269, 280
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 898
TaqI TCGA 4 cut(s) 51, 492, 670, 829
TasI AATT 1 cut(s) 666
TatI WGTACW 1 cut(s) 627
TauI GCSGC 2 cut(s) 27, 191
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 5 cut(s) 60, 252, 449, 648, 657
Tru9I TTAA 5 cut(s) 60, 252, 449, 648, 657
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 2 cut(s) 733, 890
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 4 cut(s) 722, 788, 795, 857
TspGWI ACGGA 1 cut(s) 861
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 3 cut(s) 761, 767, 818
XbaI TCTAGA 1 cut(s) 259
XmnI GAANNNNTTC 3 cut(s) 14, 379, 868
XspI CTAG 2 cut(s) 260, 429
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.