RLG00000027271

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000305
Physical Location & Seq
Reverse (-)
10174173 .. 10176057
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027271

Sequence Viewer

Length: 981 bp
ATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGCAATTCATCAACAGCTGCCAAGACCGGTAGTGGCATGTTAATTGCTGTGAAGACGATTGATCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGACAGAAATTTACTATCTAGGAAGGTTGCGACATCCAAATCTTGTGAAGTTGTTGGGTTATTGCTTTGAGGACAACCACCGGCTTCTGGTTTATGAATTTATGCCTCATGGAAGCTTGGAGATTCATCTATATGGAAGGGATTCTTACCTTCAACCACTTTCATGGATCCTGCGTATGAAGATTGCCCTTGGTGTTGCTAAGGTTCTTGCATTTCTTCATGGTACTGATGGAAAAGTGATCCATCGGGACGTTAAAAGCTCAAATATCCTTCTCGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCAAAGGATGCACCAGCTAATGATGAAAGCCATGTCTTAACAAGGGTGGTGGGGACACATGGGTATGGAGCTCCTGAGTATATTTCTGCAGGTCATTTATCCCGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTACCTTGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGATTCTGGTGACATGGAGGGTTTGGGACTCTCCCAAAATGAGCCTCGCCAAACTCCTTGTGCCAATTTAAGCAATCGCAGGAGAAGTACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

327

Amino Acids

36.24

Weight (kDa)

8.55

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 278 2.6e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 275 1.2e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 536
AciI CCGC 2 cut(s) 559, 967
AclWI GGATC 4 cut(s) 304, 317, 376, 950
AcsI RAATTY 3 cut(s) 150, 239, 705
AcuI CTGAAG 2 cut(s) 827, 934
AfaI GTAC 3 cut(s) 367, 734, 934
AfiI CCNNNNNNNGG 2 cut(s) 229, 801
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 5 cut(s) 296, 423, 599, 662, 725
AjnI CCWGG 2 cut(s) 123, 641
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
Alw21I GWGCWC 3 cut(s) 529, 700, 751
AlwI GGATC 4 cut(s) 304, 317, 376, 950
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 4 cut(s) 666, 727, 803, 953
ApeKI GCWGC 4 cut(s) 65, 758, 838, 969
ApoI RAATTY 3 cut(s) 150, 239, 705
AsiGI ACCGGT 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 666
AsuHPI GGTGA 1 cut(s) 866
AvaI CYCGRG 1 cut(s) 794
BamHI GGATCC 1 cut(s) 309
BanII GRGCYC 3 cut(s) 529, 700, 751
BbsI GAAGAC 2 cut(s) 107, 619
Bbv12I GWGCWC 3 cut(s) 529, 700, 751
BbvI GCAGC 3 cut(s) 52, 770, 850
BccI CCATC 3 cut(s) 41, 365, 393
BciT130I CCWGG 2 cut(s) 125, 643
BclI TGATCA 1 cut(s) 109
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 4 cut(s) 66, 759, 839, 970
BlsI GCNGC 4 cut(s) 67, 760, 840, 971
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 2 cut(s) 125, 643
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 125, 643
BmsI GCATC 3 cut(s) 454, 703, 767
BpiI GAAGAC 2 cut(s) 107, 619
Bpu10I CCTNAGC 1 cut(s) 342
Bsa29I ATCGAT 1 cut(s) 775
BsaBI GATNNNNATC 1 cut(s) 781
BsaJI CCNNGG 4 cut(s) 124, 331, 641, 642
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 801
Bse118I RCCGGY 2 cut(s) 74, 222
Bse1I ACTGG 1 cut(s) 730
Bse8I GATNNNNATC 1 cut(s) 781
BseBI CCWGG 2 cut(s) 125, 643
BseCI ATCGAT 1 cut(s) 775
BseDI CCNNGG 4 cut(s) 124, 331, 641, 642
BseGI GGATG 2 cut(s) 175, 469
BseJI GATNNNNATC 1 cut(s) 781
BseLI CCNNNNNNNGG 2 cut(s) 229, 801
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 730
BseXI GCAGC 3 cut(s) 52, 770, 850
BshFI GGCC 4 cut(s) 668, 729, 805, 955
BshTI ACCGGT 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 775
BsiHKAI GWGCWC 3 cut(s) 529, 700, 751
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 2 cut(s) 75, 223
BslFI GGGAC 3 cut(s) 404, 523, 885
BslI CCNNNNNNNGG 2 cut(s) 229, 801
BsmFI GGGAC 3 cut(s) 404, 523, 885
BsnI GGCC 4 cut(s) 668, 729, 805, 955
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 3 cut(s) 529, 700, 751
Bsp143I GATC 4 cut(s) 109, 309, 381, 942
BspACI CCGC 2 cut(s) 559, 967
BspANI GGCC 4 cut(s) 668, 729, 805, 955
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 775
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 304, 317, 376, 950
BsrFI RCCGGY 2 cut(s) 74, 222
BsrI ACTGG 1 cut(s) 730
BssAI RCCGGY 2 cut(s) 74, 222
BssECI CCNNGG 4 cut(s) 124, 331, 641, 642
BssMI GATC 4 cut(s) 109, 309, 381, 942
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 125, 643
Bst4CI ACNGT 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 2 cut(s) 342, 531
BstF5I GGATG 2 cut(s) 175, 469
BstKTI GATC 4 cut(s) 112, 312, 384, 945
BstMBI GATC 4 cut(s) 109, 309, 381, 942
BstMWI GCNNNNNNNGC 4 cut(s) 464, 755, 767, 945
BstNI CCWGG 2 cut(s) 125, 643
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 123, 641
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 3 cut(s) 52, 770, 850
BstV2I GAAGAC 2 cut(s) 107, 619
BstX2I RGATCY 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 306
BstYI RGATCY 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 775
BsuRI GGCC 4 cut(s) 668, 729, 805, 955
BsuTUI ATCGAT 1 cut(s) 775
BtsCI GGATG 2 cut(s) 175, 469
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 685
Cfr10I RCCGGY 2 cut(s) 74, 222
Cfr13I GGNCC 1 cut(s) 666
ClaI ATCGAT 1 cut(s) 775
Csp6I GTAC 3 cut(s) 366, 733, 933
CspAI ACCGGT 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 9 cut(s) 85, 251, 306, 362, 488, 515, 811, 859, 957
CviQI GTAC 3 cut(s) 366, 733, 933
DdeI CTNAG 2 cut(s) 342, 531
DpnI GATC 4 cut(s) 111, 311, 383, 944
DpnII GATC 4 cut(s) 109, 309, 381, 942
Ecl136II GAGCTC 3 cut(s) 527, 698, 749
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 3 cut(s) 529, 700, 751
Eco53kI GAGCTC 3 cut(s) 527, 698, 749
Eco57I CTGAAG 2 cut(s) 827, 934
Eco88I CYCGRG 1 cut(s) 794
EcoICRI GAGCTC 3 cut(s) 527, 698, 749
EcoRII CCWGG 2 cut(s) 123, 641
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 782
EcoT38I GRGCYC 3 cut(s) 529, 700, 751
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 9 cut(s) 88, 254, 309, 365, 491, 518, 814, 862, 960
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 3 cut(s) 404, 523, 885
FatI CATG 9 cut(s) 84, 250, 305, 361, 487, 514, 810, 858, 956
FauI CCCGC 2 cut(s) 566, 974
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 66, 759, 839, 970
FokI GGATG 2 cut(s) 162, 476
FriOI GRGCYC 3 cut(s) 529, 700, 751
Fsp4HI GCNGC 4 cut(s) 66, 759, 839, 970
FspBI CTAG 1 cut(s) 161
GluI GCNGC 4 cut(s) 66, 759, 839, 970
HaeIII GGCC 4 cut(s) 668, 729, 805, 955
HapII CCGG 2 cut(s) 75, 223
Hin1II CATG 9 cut(s) 88, 254, 309, 365, 491, 518, 814, 862, 960
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 5 cut(s) 265, 284, 419, 848, 873
HpaII CCGG 2 cut(s) 75, 223
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 2 cut(s) 144, 638
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 8 cut(s) 113, 131, 389, 416, 530, 609, 623, 845
Hpy8I GTNNAC 2 cut(s) 144, 638
HpyAV CCTTC 6 cut(s) 110, 159, 273, 302, 422, 719
HpyCH4III ACNGT 1 cut(s) 635
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 353, 467, 545, 770, 780
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 755, 767, 945
HpyF3I CTNAG 2 cut(s) 342, 531
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 9 cut(s) 88, 254, 309, 365, 491, 518, 814, 862, 960
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 109, 309, 381, 942
LmnI GCTCC 3 cut(s) 524, 532, 746
Lsp1109I GCAGC 3 cut(s) 52, 770, 850
LweI GCATC 3 cut(s) 454, 703, 767
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 823, 854
MalI GATC 4 cut(s) 111, 311, 383, 944
MboI GATC 4 cut(s) 109, 309, 381, 942
MboII GAAGA 4 cut(s) 112, 334, 350, 624
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 529, 700, 751
MluCI AATT 7 cut(s) 52, 90, 150, 239, 652, 705, 910
MlyI GAGTC 1 cut(s) 867
MnlI CCTC 6 cut(s) 127, 205, 258, 811, 856, 900
Mph1103I ATGCAT 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 6 cut(s) 33, 89, 396, 494, 753, 914
MslI CAYNNNNRTG 3 cut(s) 273, 304, 519
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 75, 223
MspR9I CCNGG 2 cut(s) 125, 643
MvaI CCWGG 2 cut(s) 125, 643
MwoI GCNNNNNNNGC 4 cut(s) 464, 755, 767, 945
NdeII GATC 4 cut(s) 109, 309, 381, 942
NlaIII CATG 9 cut(s) 88, 254, 309, 365, 491, 518, 814, 862, 960
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 823, 854
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 1 cut(s) 88
PasI CCCWGGG 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 265, 284, 419, 848
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 4 cut(s) 67, 760, 840, 971
PleI GAGTC 1 cut(s) 867
PpsI GAGTC 1 cut(s) 867
Psp124BI GAGCTC 3 cut(s) 529, 700, 751
Psp6I CCWGG 2 cut(s) 123, 641
PspGI CCWGG 2 cut(s) 123, 641
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 666
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 3 cut(s) 367, 734, 934
RsaNI GTAC 3 cut(s) 366, 733, 933
RseI CAYNNNNRTG 3 cut(s) 273, 304, 519
SacI GAGCTC 3 cut(s) 529, 700, 751
SaqAI TTAA 6 cut(s) 33, 89, 396, 494, 753, 914
SatI GCNGC 4 cut(s) 66, 759, 839, 970
Sau3AI GATC 4 cut(s) 109, 309, 381, 942
Sau96I GGNCC 1 cut(s) 666
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 1 cut(s) 867
ScrFI CCNGG 2 cut(s) 125, 643
SduI GDGCHC 3 cut(s) 529, 700, 751
SfaNI GCATC 3 cut(s) 454, 703, 767
SfcI CTRYAG 1 cut(s) 543
SmiMI CAYNNNNRTG 3 cut(s) 273, 304, 519
Sse9I AATT 7 cut(s) 52, 90, 150, 239, 652, 705, 910
SsiI CCGC 2 cut(s) 559, 967
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 3 cut(s) 529, 700, 751
StyD4I CCNGG 2 cut(s) 123, 641
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 635
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 417, 775
TasI AATT 7 cut(s) 52, 90, 150, 239, 652, 705, 910
TatI WGTACW 2 cut(s) 732, 932
TfiI GAWTC 4 cut(s) 265, 284, 419, 848
Tru1I TTAA 6 cut(s) 33, 89, 396, 494, 753, 914
Tru9I TTAA 6 cut(s) 33, 89, 396, 494, 753, 914
TseFI GTSAC 2 cut(s) 823, 854
TseI GCWGC 4 cut(s) 65, 758, 838, 969
Tsp45I GTSAC 2 cut(s) 823, 854
TspDTI ATGAA 8 cut(s) 45, 252, 257, 294, 335, 350, 495, 827
XapI RAATTY 3 cut(s) 150, 239, 705
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 734
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.