Rroxscaffold_4G00289400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000305
Physical Location & Seq
Reverse (-)
10034041 .. 10037251
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289400.1

Sequence Viewer

Length: 1389 bp
ATGGGTGGGGGAATTCGCACAAGCGTGAAGGGGTACCTCCTTTCGCAGCGGATCACTACGGCTTCAGATACCGTGCATGCAAACGAGAGCAGCAATAGAAATTTCACCGCGCCCCAAGCTGCTGATTCAGAACAAGAGACGAGCACGGACTTGGATTCATCTAACTCATATTGGCTCAGTAGGTTTAGTGGTAGCATTCCTTGCTTGCCAATATTGAGCTTTGCTTCAAAGAGCAGCGTTTCAAAGAGAACTAGAATCAGAGCTGAGAGTCTGCCTCACAGAGGTTCAGGGTTGCCTTCAACTCCTCGGACAGATGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTCCTGTCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTGAAAGAATGGCTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGAAATTTACTACCTTGGACAGCTGCGTCACCCAAATCTTGTGAAATTGATAGGCTATTGTTCAGAGGATAATGAACTGCTTCTGGTGTATGAATTTATGCCCCGTGGCAGTTTGGAGAATCATATATTTAGAAGGAGTTCTCACTTTCAACCACTTTCGTGGACTGTTCGTATGAAGATTGCTCTTGGTGCTGCAAAGGCTCTAGCATTTCTTCACAATGAAGCAAAAGTTATACATCGTGACTTTAAAACATCTAATATCCTGTTGGATTCAACCTACAATGTTAAAATCTGTGATTTTGGTTTGGCTGTGGATGCACGAGCATTTGACAGACACCGAGGTGCTAAAACAAGGGTCATGGGCACATTTGGATATGCAGCTCCCGAGTATATAGAAACAAGGGTCATGGGCACATATGGATATGCAGCTCCTGAGTATGTAGCTACAGGTCGTCTGACCACCAAATGTGATGTCTATGGTTTTGGAGCTGTTATGCTCGAATTGATTTCCGGAAAACGAGTTTTTGACCGGAACCGGCCACCCGGGGAACATAACTTAGTTGAATGGGCCAAACCTTACCTTTTCAGCAAACACAGAGTCCTCCAAATTTTTGATCATCATATCAAAGGCCAGTTCTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAAAGTGGTAAAAACATTGGAGAAGCTTCAGGAATCCAGTGATATGGATGGCTTGGGGATCTCTCAAAATAAACGATGCCAAATCCGCATGTCAGTTCAATCAATGGTCCCAAATACTGCAGGAGAAGTATCAATGGAACCAGCAATTCAACACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

462

Amino Acids

51.7

Weight (kDa)

9.47

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 128 - 304 5.2e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 129 - 416 1.2e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 305 - 414 1e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 537
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 1022
AciI CCGC 4 cut(s) 49, 108, 360, 1315
AclWI GGATC 3 cut(s) 59, 1199, 1295
AcoI YGGCCR 2 cut(s) 1049, 1155
AcsI RAATTY 6 cut(s) 12, 100, 439, 516, 605, 1119
AcuI CTGAAG 2 cut(s) 48, 1241
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 281, 366, 1215
AgsI TTSAA 8 cut(s) 228, 243, 300, 662, 786, 1076, 1328, 1379
AjnI CCWGG 2 cut(s) 365, 460
AleI CACNNNNGTG 3 cut(s) 23, 670, 852
Alw21I GWGCWC 2 cut(s) 146, 1165
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 59, 1199, 1295
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 2 cut(s) 896, 1055
Aor13HI TCCGGA 1 cut(s) 1022
AoxI GGCC 6 cut(s) 377, 1049, 1080, 1141, 1155, 1217
ApoI RAATTY 6 cut(s) 12, 100, 439, 516, 605, 1119
ArsI GACNNNNNNTTYG 4 cut(s) 969, 1001, 1095, 1127
Asp700I GAANNNNTTC 2 cut(s) 591, 649
Asp718I GGTACC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 410, 1080, 1336
AsuC2I CCSGG 2 cut(s) 1056, 1057
AsuHPI GGTGA 4 cut(s) 97, 407, 476, 533
AvaI CYCGRG 2 cut(s) 896, 1055
AvaII GGWCC 2 cut(s) 410, 1336
BaeGI GKGCMC 2 cut(s) 878, 926
BalI TGGCCA 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 1165
BauI CACGAG 1 cut(s) 831
Bbv12I GWGCWC 2 cut(s) 146, 1165
BccI CCATC 1 cut(s) 1271
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 367, 462
BclI TGATCA 2 cut(s) 433, 1126
BcnI CCSGG 2 cut(s) 1056, 1057
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 252, 716
BfmI CTRYAG 2 cut(s) 957, 1347
BglII AGATCT 1 cut(s) 321
Bme1390I CCNGG 4 cut(s) 367, 462, 1056, 1057
Bme18I GGWCC 2 cut(s) 410, 1336
BmeT110I CYCGRG 2 cut(s) 896, 1055
BmgT120I GGNCC 3 cut(s) 410, 1080, 1336
BmiI GGNNCC 4 cut(s) 35, 1046, 1338, 1368
BmrFI CCNGG 4 cut(s) 367, 462, 1056, 1057
BmsI GCATC 2 cut(s) 817, 1295
BplI GAGNNNNNCTC 2 cut(s) 259, 291
Bpu10I CCTNAGC 1 cut(s) 1214
BpuMI CCSGG 2 cut(s) 1056, 1057
BsaJI CCNNGG 6 cut(s) 305, 526, 616, 850, 1055, 1056
BsaWI WCCGGW 2 cut(s) 1022, 1041
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 366, 1215
Bse118I RCCGGY 1 cut(s) 1047
Bse1I ACTGG 2 cut(s) 1144, 1266
BseAI TCCGGA 1 cut(s) 1022
BseBI CCWGG 2 cut(s) 367, 462
BseDI CCNNGG 6 cut(s) 305, 526, 616, 850, 1055, 1056
BseGI GGATG 2 cut(s) 832, 1282
BseLI CCNNNNNNNGG 3 cut(s) 281, 366, 1215
BseMII CTCAG 3 cut(s) 190, 255, 936
BseNI ACTGG 2 cut(s) 1144, 1266
BseRI GAGGAG 1 cut(s) 294
BseSI GKGCMC 2 cut(s) 878, 926
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 6 cut(s) 379, 1051, 1082, 1143, 1157, 1219
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 146, 1165
BsiHKCI CYCGRG 2 cut(s) 896, 1055
BsiSI CCGG 4 cut(s) 1023, 1042, 1048, 1056
BslFI GGGAC 1 cut(s) 1322
BslI CCNNNNNNNGG 3 cut(s) 281, 366, 1215
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 1322
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 6 cut(s) 379, 1051, 1082, 1143, 1157, 1219
BsoBI CYCGRG 2 cut(s) 896, 1055
Bsp1286I GDGCHC 4 cut(s) 146, 878, 926, 1165
Bsp13I TCCGGA 1 cut(s) 1022
Bsp143I GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
BspACI CCGC 4 cut(s) 49, 108, 360, 1315
BspANI GGCC 6 cut(s) 379, 1051, 1082, 1143, 1157, 1219
BspCNI CTCAG 3 cut(s) 189, 256, 937
BspEI TCCGGA 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 4 cut(s) 35, 1046, 1338, 1368
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 3 cut(s) 59, 1199, 1295
BspT107I GGYRCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 1047
BsrI ACTGG 2 cut(s) 1144, 1266
BssAI RCCGGY 1 cut(s) 1047
BssECI CCNNGG 6 cut(s) 305, 526, 616, 850, 1055, 1056
BssMI GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 367, 462
Bst4CI ACNGT 2 cut(s) 73, 679
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 78, 206
BstDEI CTNAG 5 cut(s) 176, 264, 945, 1069, 1214
BstDSI CCRYGG 1 cut(s) 616
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 832, 1282
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 54, 324, 436, 1129, 1207, 1290
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
BstMWI GCNNNNNNNGC 7 cut(s) 116, 201, 701, 710, 827, 1169, 1314
BstNI CCWGG 2 cut(s) 367, 462
BstNSI RCATGY 2 cut(s) 80, 1321
BstSCI CCNGG 4 cut(s) 365, 460, 1054, 1055
BstSFI CTRYAG 2 cut(s) 957, 1347
BstSLI GKGCMC 2 cut(s) 878, 926
BstUI CGCG 1 cut(s) 110
BstX2I RGATCY 3 cut(s) 321, 1204, 1287
BstXI CCANNNNNNTGG 2 cut(s) 672, 1273
BstYI RGATCY 3 cut(s) 321, 1204, 1287
BsuRI GGCC 6 cut(s) 379, 1051, 1082, 1143, 1157, 1219
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 2 cut(s) 832, 1282
BtsIMutI CAGTG 1 cut(s) 1273
Cac8I GCNNGC 2 cut(s) 78, 206
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 1047
Cfr13I GGNCC 3 cut(s) 410, 1080, 1336
Cfr9I CCCGGG 1 cut(s) 1055
CseI GACGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 34
CviAII CATG 5 cut(s) 77, 871, 919, 1225, 1318
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 176, 264, 945, 1069, 1214
DpnI GATC 6 cut(s) 53, 323, 435, 1128, 1206, 1289
DpnII GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
DraI TTTAAA 1 cut(s) 760
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 2 cut(s) 1049, 1155
Ecl136II GAGCTC 1 cut(s) 1163
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 410, 1336
Eco53kI GAGCTC 1 cut(s) 1163
Eco57I CTGAAG 2 cut(s) 48, 1241
Eco88I CYCGRG 2 cut(s) 896, 1055
EcoICRI GAGCTC 1 cut(s) 1163
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRI GAATTC 2 cut(s) 12, 439
EcoRII CCWGG 2 cut(s) 365, 460
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 1165
ErhI CCWWGG 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 5 cut(s) 80, 874, 922, 1228, 1321
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 1322
FatI CATG 5 cut(s) 76, 870, 918, 1224, 1317
FauNDI CATATG 1 cut(s) 928
FbaI TGATCA 2 cut(s) 433, 1126
FokI GGATG 2 cut(s) 839, 1289
FriOI GRGCYC 1 cut(s) 1165
FspBI CTAG 2 cut(s) 252, 716
GlaI GCGC 1 cut(s) 111
HaeIII GGCC 6 cut(s) 379, 1051, 1082, 1143, 1157, 1219
HapII CCGG 4 cut(s) 1023, 1042, 1048, 1056
HgaI GACGC 1 cut(s) 527
HhaI GCGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 80, 874, 922, 1228, 1321
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HindIII AAGCTT 2 cut(s) 1211, 1253
HinfI GANTC 8 cut(s) 125, 155, 255, 268, 631, 782, 1110, 1262
HpaII CCGG 4 cut(s) 1023, 1042, 1048, 1056
HphI GGTGA 4 cut(s) 97, 407, 476, 533
Hpy166II GTNNAC 2 cut(s) 675, 1177
Hpy188I TCNGA 7 cut(s) 67, 130, 260, 309, 438, 577, 969
Hpy188III TCNNGA 7 cut(s) 512, 752, 896, 944, 1023, 1200, 1259
Hpy8I GTNNAC 2 cut(s) 675, 1177
HpyAV CCTTC 3 cut(s) 22, 306, 639
HpyCH4III ACNGT 2 cut(s) 73, 679
HpyCH4V TGCA 8 cut(s) 76, 80, 707, 830, 890, 938, 1184, 1349
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 201, 701, 710, 827, 1169, 1314
HpyF3I CTNAG 5 cut(s) 176, 264, 945, 1069, 1214
Hsp92II CATG 5 cut(s) 80, 874, 922, 1228, 1321
HspAI GCGC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 1022
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 2 cut(s) 433, 1126
Kzo9I GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
LmnI GCTCC 3 cut(s) 898, 946, 998
LweI GCATC 2 cut(s) 817, 1295
MaeI CTAG 2 cut(s) 252, 716
MaeIII GTNAC 2 cut(s) 539, 752
MalI GATC 6 cut(s) 53, 323, 435, 1128, 1206, 1289
MboI GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
MboII GAAGA 2 cut(s) 700, 716
MflI RGATCY 3 cut(s) 321, 1204, 1287
MhlI GDGCHC 4 cut(s) 146, 878, 926, 1165
MlsI TGGCCA 1 cut(s) 1157
MluCI AATT 9 cut(s) 12, 100, 439, 516, 557, 605, 1013, 1119, 1374
MluNI TGGCCA 1 cut(s) 1157
MlyI GAGTC 2 cut(s) 277, 1119
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 9 cut(s) 47, 275, 285, 315, 391, 483, 571, 845, 1124
Mox20I TGGCCA 1 cut(s) 1157
MroI TCCGGA 1 cut(s) 1022
MroXI GAANNNNTTC 2 cut(s) 591, 649
MscI TGGCCA 1 cut(s) 1157
MseI TTAA 6 cut(s) 345, 420, 495, 759, 798, 1167
MslI CAYNNNNRTG 3 cut(s) 23, 670, 852
Msp20I TGGCCA 1 cut(s) 1157
MspA1I CMGCKG 3 cut(s) 49, 452, 535
MspI CCGG 4 cut(s) 1023, 1042, 1048, 1056
MspR9I CCNGG 4 cut(s) 367, 462, 1056, 1057
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 2 cut(s) 367, 462
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 7 cut(s) 116, 201, 701, 710, 827, 1169, 1314
NciI CCSGG 2 cut(s) 1056, 1057
NdeI CATATG 1 cut(s) 928
NdeII GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
NlaIII CATG 5 cut(s) 80, 874, 922, 1228, 1321
NlaIV GGNNCC 4 cut(s) 35, 1046, 1338, 1368
NmuCI GTSAC 2 cut(s) 539, 752
NspI RCATGY 2 cut(s) 80, 1321
OliI CACNNNNGTG 3 cut(s) 23, 670, 852
PaeI GCATGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 2 cut(s) 591, 649
PfeI GAWTC 6 cut(s) 125, 155, 255, 631, 782, 1262
PleI GAGTC 2 cut(s) 276, 1118
PpsI GAGTC 2 cut(s) 276, 1118
Psp124BI GAGCTC 1 cut(s) 1165
Psp6I CCWGG 2 cut(s) 365, 460
PspGI CCWGG 2 cut(s) 365, 460
PspN4I GGNNCC 4 cut(s) 35, 1046, 1338, 1368
PspPI GGNCC 3 cut(s) 410, 1080, 1336
PstI CTGCAG 1 cut(s) 1351
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 3 cut(s) 321, 1204, 1287
PvuII CAGCTG 2 cut(s) 452, 535
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 23, 670, 852
SacI GAGCTC 1 cut(s) 1165
SaqAI TTAA 6 cut(s) 345, 420, 495, 759, 798, 1167
Sau3AI GATC 6 cut(s) 51, 321, 433, 1126, 1204, 1287
Sau96I GGNCC 3 cut(s) 410, 1080, 1336
SchI GAGTC 2 cut(s) 277, 1119
ScrFI CCNGG 4 cut(s) 367, 462, 1056, 1057
SduI GDGCHC 4 cut(s) 146, 878, 926, 1165
SfaNI GCATC 2 cut(s) 817, 1295
SfcI CTRYAG 2 cut(s) 957, 1347
SinI GGWCC 2 cut(s) 410, 1336
SmaI CCCGGG 1 cut(s) 1057
SmiMI CAYNNNNRTG 3 cut(s) 23, 670, 852
SphI GCATGC 1 cut(s) 80
Sse9I AATT 9 cut(s) 12, 100, 439, 516, 557, 605, 1013, 1119, 1374
SsiI CCGC 4 cut(s) 49, 108, 360, 1315
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 252, 716
SstI GAGCTC 1 cut(s) 1165
StyD4I CCNGG 4 cut(s) 365, 460, 1054, 1055
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 73, 679
TaqI TCGA 1 cut(s) 1011
TasI AATT 9 cut(s) 12, 100, 439, 516, 557, 605, 1013, 1119, 1374
TfiI GAWTC 6 cut(s) 125, 155, 255, 631, 782, 1262
Tru1I TTAA 6 cut(s) 345, 420, 495, 759, 798, 1167
Tru9I TTAA 6 cut(s) 345, 420, 495, 759, 798, 1167
TscAI CASTG 1 cut(s) 1273
TseFI GTSAC 2 cut(s) 539, 752
Tsp45I GTSAC 2 cut(s) 539, 752
TspDTI ATGAA 8 cut(s) 147, 363, 432, 600, 618, 701, 747, 1241
TspGWI ACGGA 1 cut(s) 161
TspMI CCCGGG 1 cut(s) 1055
TspRI CASTG 1 cut(s) 1273
VpaK11BI GGWCC 2 cut(s) 410, 1336
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 6 cut(s) 12, 100, 439, 516, 605, 1119
XceI RCATGY 2 cut(s) 80, 1321
XmaI CCCGGG 1 cut(s) 1055
XmnI GAANNNNTTC 2 cut(s) 591, 649
XspI CTAG 2 cut(s) 252, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.